JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC134_chr22_41795679_41837164	0/0	t0018	6446	5	1	0	3	0	1	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0019	6442	5	5	0	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0020	6446	5	0	0	5	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0021	6445	4	3	1	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0022	6446	4	4	0	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0023	6443	4	2	1	0	0	1	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0024	6444	3	0	0	2	0	1	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0025	6445	3	3	0	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0026	6446	3	3	0	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0027	6443	3	0	3	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0028	6445	3	3	0	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0029	6445	3	0	2	1	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/1	t0030	6446	3	1	0	0	1	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0031	6444	2	2	0	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0032	6444	2	1	0	1	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0033	6444	2	2	0	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0034	6446	2	0	0	2	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0035	6447	2	2	0	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0036	6446	2	0	0	2	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0037	6444	2	2	0	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0038	6446	2	0	2	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0039	6447	2	0	0	2	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0040	6443	2	0	1	0	1	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0041	6443	1	0	0	0	1	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0042	6443	1	0	1	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0043	6444	1	0	0	0	0	1	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0044	6442	1	0	0	1	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0045	6443	1	0	1	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0046	6443	1	0	1	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0047	6444	1	1	0	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0048	6446	1	1	0	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0049	6446	1	1	0	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0050	6447	1	0	1	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0051	6444	1	1	0	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0052	6446	1	0	0	1	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0053	6443	1	0	0	1	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0054	6445	1	1	0	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0055	6444	1	1	0	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0056	6443	1	0	0	1	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0057	6446	1	0	0	1	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0058	6444	1	0	0	1	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0059	6446	1	0	0	1	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	1/0	t0060	6446	1	0	0	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0061	6445	1	0	1	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0062	6445	1	0	0	1	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0063	6446	1	0	0	1	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0064	6447	1	0	0	0	0	1	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0065	6445	1	0	0	1	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0066	6461	1	0	0	1	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0067	6446	1	0	0	1	0	0	copy fasta	CCDC134	chr22	41795679	41837164