JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC134_chr22_41795679_41837164	0/0	t0068	6445	1	1	0	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0069	6443	1	0	0	0	1	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0070	6446	1	0	0	1	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0071	6443	1	1	0	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0072	6447	1	0	0	1	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	t0073	6445	1	0	0	1	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC136_chr7_128786968_128827130	1/1	t0001	782	295	66	49	137	11	30	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	t0002	782	83	19	6	47	3	8	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	t0003	782	1	1	0	0	0	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	t0004	782	1	0	1	0	0	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC137_chr17_81661737_81678899	1/0	t0001	1226	211	43	35	100	9	23	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	t0002	1226	72	12	3	51	2	4	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	t0003	1226	57	7	19	17	3	11	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/1	t0004	1226	26	9	7	0	4	5	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	t0005	1226	13	9	3	1	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	t0006	1226	5	0	3	2	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	t0007	1227	3	0	1	2	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	t0008	1226	3	3	0	0	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	t0009	1227	3	0	2	1	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	t0010	1226	3	3	0	0	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	t0011	1226	2	2	0	0	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	t0012	1227	2	0	0	2	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	t0013	1226	2	0	0	2	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	t0014	1226	2	1	1	0	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	t0015	1226	1	0	0	1	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	t0016	1226	1	0	0	1	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	t0017	1226	1	1	0	0	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	t0018	1226	1	1	0	0	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	t0019	1227	1	1	0	0	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	t0020	1226	1	0	0	0	0	1	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	t0021	1226	1	1	0	0	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	t0022	1226	1	1	0	0	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC138_chr2_108781771_108881578	0/0	t0001	378	114	60	13	30	2	9	copy fasta	CCDC138	chr2	108781771	108881578
CCDC138_chr2_108781771_108881578	0/1	t0002	378	99	28	21	32	8	9	copy fasta	CCDC138	chr2	108781771	108881578
CCDC138_chr2_108781771_108881578	1/0	t0003	378	6	2	1	0	0	2	copy fasta	CCDC138	chr2	108781771	108881578
CCDC138_chr2_108781771_108881578	0/0	t0004	378	1	0	1	0	0	0	copy fasta	CCDC138	chr2	108781771	108881578
CCDC13_chr3_42700756_42778253	1/0	t0001	3309	112	17	31	45	4	14	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/1	t0002	3309	56	7	7	22	4	15	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0003	3309	37	7	9	14	1	6	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0004	3309	28	8	0	19	0	1	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0005	3309	10	0	1	9	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0006	3309	7	0	0	7	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0007	3309	7	4	0	3	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0008	3309	5	0	5	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0009	3309	4	4	0	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0010	3309	4	4	0	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0011	3309	4	2	0	0	0	2	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0012	3309	4	4	0	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0013	3309	4	0	2	2	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0014	3309	3	2	1	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253