JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC13_chr3_42700756_42778253	0/0	t0015	3309	3	2	1	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0016	3309	3	2	1	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0017	3309	3	3	0	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0018	3309	3	3	0	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0019	3309	2	0	2	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0020	3309	1	1	0	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0021	3309	1	1	0	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0022	3309	1	1	0	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0023	3309	1	0	0	1	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0024	3309	1	0	1	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0025	3309	1	0	0	1	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0026	3309	1	0	0	1	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0027	3309	1	0	0	0	0	1	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0028	3309	1	1	0	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0029	3309	1	0	0	1	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0030	3309	1	0	0	1	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0031	3309	1	0	1	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0032	3309	1	1	0	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0033	3309	1	1	0	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0034	3309	1	0	0	0	0	1	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0035	3309	1	1	0	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0036	3309	1	0	0	0	1	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0037	3309	1	0	0	1	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0038	3309	1	0	1	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0039	3309	1	0	0	1	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	t0040	3309	1	0	1	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC141_chr2_178824757_179055137	0/0	t0001	4613	39	6	5	26	0	2	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0002	4613	27	14	10	1	0	2	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0003	4612	19	4	0	14	0	1	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0004	4613	18	1	7	4	0	6	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0005	4614	15	1	3	10	0	1	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0006	4613	12	3	1	5	0	3	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0007	4611	10	0	6	4	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0008	4613	7	6	0	0	0	1	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0009	4613	7	7	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0010	4612	6	6	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0011	4613	5	4	0	0	1	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0012	4614	5	3	0	0	0	2	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0013	4613	5	1	2	0	1	1	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0014	4613	4	4	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0015	4614	4	0	1	0	2	1	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0016	4613	4	3	1	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0017	4612	3	0	0	3	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0018	4612	3	0	1	2	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0019	4613	3	0	0	2	0	1	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0020	4612	3	0	2	1	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0021	4613	2	2	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0022	4613	2	1	0	1	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0023	4613	2	0	0	2	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0024	4612	2	2	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137