JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC141_chr2_178824757_179055137	0/0	t0025	4612	2	0	0	0	0	2	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0026	4613	2	0	0	2	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0027	4614	2	0	0	2	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0028	4613	2	0	0	0	0	2	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0029	4613	2	0	2	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0030	4612	2	2	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0031	4614	1	0	0	0	0	1	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0032	4614	1	0	1	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0033	4613	1	0	0	0	0	1	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0034	4613	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0035	4612	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	1/0	t0036	4613	1	0	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0037	4613	1	0	1	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0038	4613	1	0	0	0	1	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0039	4613	1	0	0	1	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0040	4613	1	0	0	0	0	1	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0041	4613	1	0	0	1	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0042	4613	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0043	4614	1	0	1	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0044	4614	1	0	0	0	0	1	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0045	4613	1	0	0	0	0	1	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0046	4612	1	0	1	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0047	4613	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0048	4613	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0049	4613	1	0	0	1	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0050	4614	1	0	0	0	0	1	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0051	4613	1	0	0	1	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0052	4600	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0053	4613	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0054	4613	1	0	1	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0055	4613	1	0	0	1	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0056	4613	1	0	1	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0057	4612	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0058	4614	1	0	1	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/1	t0059	4614	1	0	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0060	4614	1	0	0	1	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0061	4614	1	0	1	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0062	4612	1	0	0	1	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0063	4613	1	0	1	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0064	4613	1	0	0	1	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0065	4613	1	0	0	1	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0066	4612	1	0	0	0	1	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0067	4613	1	0	0	1	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0068	4613	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0069	4613	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0070	4614	1	0	1	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0071	4614	1	0	0	0	0	1	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0072	4614	1	0	1	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0073	4614	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0074	4613	1	0	0	0	0	1	copy fasta	CCDC141	chr2	178824757	179055137