Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADAM22_chr7_87929251_88207889	0/0	t0029	6614	1	1	0	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0030	6614	1	0	1	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM23_chr2_206438532_206626127	0/1	t0001	3835	171	40	35	74	10	11	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0002	3836	79	19	7	42	0	11	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0003	3836	16	0	12	0	2	2	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0004	3836	11	0	3	8	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0005	3836	10	0	0	9	0	1	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0006	3836	6	0	2	0	0	4	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	1/0	t0007	3836	6	4	1	0	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0008	3835	4	3	1	0	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0009	3835	4	0	0	4	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0010	3836	3	0	0	3	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0011	3836	3	3	0	0	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0012	3835	3	0	3	0	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0013	3835	3	2	1	0	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0014	3836	2	2	0	0	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0015	3836	2	2	0	0	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0016	3836	2	0	1	0	1	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0017	3835	2	0	0	2	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0018	3835	2	0	0	2	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0019	3836	2	2	0	0	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0020	3835	2	2	0	0	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0021	3835	2	0	0	2	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0022	3836	2	0	0	2	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0023	3835	1	0	0	1	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0024	3835	1	0	0	0	0	1	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0025	3836	1	0	1	0	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0026	3836	1	1	0	0	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0027	3836	1	1	0	0	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0028	3836	1	1	0	0	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0029	3836	1	1	0	0	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0030	3835	1	1	0	0	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0031	3836	1	0	0	1	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0032	3836	1	0	0	1	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0033	3836	1	0	0	0	0	1	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0034	3836	1	1	0	0	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0035	3836	1	1	0	0	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0036	3836	1	0	1	0	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0037	3836	1	0	0	1	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0038	3836	1	0	0	1	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0039	3835	1	0	0	1	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0040	3835	1	0	0	0	0	1	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0041	3835	1	0	0	0	1	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0042	3835	1	1	0	0	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	t0043	3835	1	1	0	0	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM28_chr8_24289069_24364014	0/0	t0001	4705	93	8	6	69	5	5	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0002	4705	81	35	13	17	2	14	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/1	t0003	4705	58	4	14	24	3	12	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0004	4706	18	0	0	18	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0005	4706	14	3	2	9	0	0	copy fasta	ADAM28	chr8	24289069	24364014