JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC141_chr2_178824757_179055137	0/0	t0075	4612	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0076	4612	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0077	4613	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0078	4613	1	0	1	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0079	4613	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0080	4613	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0081	4611	1	0	0	1	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0082	4612	1	0	0	1	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0083	4612	1	0	0	1	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0084	4611	1	0	1	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	t0085	4613	1	0	0	0	0	1	copy fasta	CCDC141	chr2	178824757	179055137
CCDC142_chr2_74467832_74487998	0/0	t0001	1875	83	13	32	18	10	10	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0002	1873	68	2	7	56	0	3	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0003	1874	64	6	9	44	1	4	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0004	1874	46	30	4	10	1	1	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/1	t0005	1875	19	7	4	5	0	2	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	1/0	t0006	1876	19	2	7	8	0	1	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0007	1874	16	14	2	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0008	1874	8	8	0	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0009	1877	7	1	1	3	1	1	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0010	1876	7	2	0	3	0	2	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0011	1877	5	0	0	2	0	3	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0012	1874	4	3	1	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0013	1864	3	2	1	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0014	1875	2	0	0	0	0	2	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0015	1874	1	0	0	1	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0016	1875	1	0	0	0	1	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0017	1873	1	0	0	1	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0018	1874	1	0	0	1	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0019	1878	1	0	0	1	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0020	1876	1	0	1	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0021	1876	1	1	0	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0022	1875	1	1	0	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0023	1874	1	0	0	1	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0024	1875	1	0	0	1	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0025	1875	1	0	1	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0026	1875	1	0	1	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0027	1875	1	0	1	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0028	1874	1	1	0	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0029	1874	1	1	0	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0030	1873	1	0	0	1	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0031	1873	1	1	0	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0032	1873	1	1	0	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	t0033	1873	1	0	0	0	0	1	copy fasta	CCDC142	chr2	74467832	74487998
CCDC144A_chr17_16685241_16782881	1/0	t0001	4409	164	29	33	74	7	20	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/1	t0002	4409	53	0	10	36	1	5	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0003	4409	41	12	5	13	0	11	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0004	4409	13	13	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0005	4409	6	0	5	0	1	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0006	4409	4	4	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881