JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC144A_chr17_16685241_16782881	0/0	t0007	4408	4	4	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0008	4409	3	1	1	0	1	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0009	4409	2	2	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0010	4409	2	0	1	0	1	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0011	4409	2	2	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0012	4409	2	0	0	2	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0013	4409	2	1	0	1	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0014	4409	2	0	2	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0015	4409	2	0	1	0	1	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0016	4409	1	1	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0017	4409	1	1	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0018	4409	1	0	0	1	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0019	4409	1	0	0	1	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0020	4409	1	0	0	1	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0021	4409	1	1	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0022	4409	1	1	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0023	4409	1	0	0	1	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0024	4409	1	0	0	1	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0025	4409	1	0	0	1	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0026	4409	1	0	0	1	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0027	4409	1	0	0	1	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0028	4409	1	1	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0029	4409	1	1	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0030	4409	1	1	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	t0031	4409	1	1	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC146_chr7_77117615_77300204	1/1	t0001	468	168	50	32	63	7	14	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	t0002	468	65	21	9	24	4	7	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	t0003	468	13	0	3	2	5	3	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	t0004	468	1	0	0	1	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	t0005	468	1	1	0	0	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC148_chr2_158166073_158461753	1/0	t0001	1355	144	28	13	83	6	13	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/1	t0002	1356	81	18	18	30	8	6	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	t0003	1355	18	17	1	0	0	0	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	t0004	1356	11	10	1	0	0	0	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	t0005	1355	3	0	0	0	2	1	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	t0006	1356	3	2	1	0	0	0	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	t0007	1355	1	0	0	1	0	0	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	t0008	1356	1	0	0	1	0	0	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	t0009	1355	1	0	0	1	0	0	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	t0010	1355	1	1	0	0	0	0	copy fasta	CCDC148	chr2	158166073	158461753
CCDC149_chr4_24798514_24918042	0/0	t0001	5054	87	3	17	59	1	7	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/1	t0002	5054	28	5	8	6	1	7	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	t0003	5054	17	0	1	16	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	t0004	5054	16	13	3	0	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	t0005	5053	15	2	7	4	0	2	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	t0006	5053	15	2	7	1	2	3	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	1/0	t0007	5054	13	2	3	4	1	2	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	t0008	5053	13	0	2	10	0	1	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	t0009	5053	9	0	1	7	0	1	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	t0010	5052	9	0	0	9	0	0	copy fasta	CCDC149	chr4	24798514	24918042