JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC149_chr4_24798514_24918042	0/0	t0061	5054	1	1	0	0	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	t0062	5054	1	1	0	0	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	t0063	5054	1	0	0	1	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	t0064	5053	1	0	0	1	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	t0065	5052	1	0	0	1	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	t0066	5054	1	0	0	1	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	t0067	5054	1	0	0	1	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	t0068	5054	1	1	0	0	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	t0069	5053	1	1	0	0	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	t0070	5053	1	0	0	0	0	1	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	t0071	5053	1	0	0	1	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	t0072	5053	1	1	0	0	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	t0073	5053	1	1	0	0	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	t0074	5052	1	1	0	0	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	t0075	5054	1	1	0	0	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	t0076	5054	1	0	1	0	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	t0077	5054	1	0	1	0	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	t0078	5054	1	0	0	0	0	1	copy fasta	CCDC149	chr4	24798514	24918042
CCDC14_chr3_123908422_123966229	0/0	t0001	1415	125	16	12	93	1	3	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/1	t0002	1414	90	18	30	17	4	20	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	t0003	1414	65	29	2	28	0	6	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	1/0	t0004	1414	51	4	9	19	3	15	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	t0005	1415	7	5	1	0	1	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	t0006	1413	7	5	0	2	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	t0007	1416	7	0	0	6	0	1	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	t0008	1415	3	0	0	1	0	2	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	t0009	1416	2	2	0	0	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	t0010	1414	2	2	0	0	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	t0011	1414	2	2	0	0	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	t0012	1414	1	0	1	0	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	t0013	1414	1	0	0	0	0	1	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	t0014	1415	1	1	0	0	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	t0015	1414	1	1	0	0	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	t0016	1415	1	0	1	0	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	t0017	1414	1	1	0	0	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	t0018	1413	1	0	0	0	1	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC150_chr2_196634715_196737801	1/1	t0001	292	202	82	43	42	6	27	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	t0002	292	6	3	0	3	0	0	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	t0003	292	1	0	0	1	0	0	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	t0004	292	1	0	1	0	0	0	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	t0005	292	1	0	0	0	0	1	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	t0006	292	1	1	0	0	0	0	copy fasta	CCDC150	chr2	196634715	196737801
CCDC152_chr5_42751818_42807439	1/0	t0001	2729	118	19	22	63	4	9	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	t0002	2730	89	9	18	49	6	7	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/1	t0003	2729	48	24	12	0	2	9	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	t0004	2725	31	0	1	19	0	11	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	t0005	2729	11	0	5	6	0	0	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	t0006	2725	8	8	0	0	0	0	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	t0007	2729	8	7	1	0	0	0	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	t0008	2725	7	7	0	0	0	0	copy fasta	CCDC152	chr5	42751818	42807439