JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC152_chr5_42751818_42807439	0/0	t0009	2729	6	6	0	0	0	0	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	t0010	2725	5	0	0	5	0	0	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	t0011	2729	3	0	1	0	2	0	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	t0012	2729	2	0	0	2	0	0	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	t0013	2729	2	1	1	0	0	0	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	t0014	2725	2	1	1	0	0	0	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	t0015	2730	2	0	2	0	0	0	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	t0016	2729	1	0	0	0	0	1	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	t0017	2729	1	0	0	0	0	1	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	t0018	2729	1	1	0	0	0	0	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	t0019	2729	1	1	0	0	0	0	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	t0020	2725	1	0	0	1	0	0	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	t0021	2730	1	0	0	1	0	0	copy fasta	CCDC152	chr5	42751818	42807439
CCDC153_chr11_119185254_119200841	1/1	t0001	102	263	75	60	96	13	17	copy fasta	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	t0002	102	165	25	16	90	3	31	copy fasta	CCDC153	chr11	119185254	119200841
CCDC154_chr16_1429383_1449556	0/1	t0001	260	234	23	40	129	10	31	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	1/0	t0002	260	96	27	30	24	5	9	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	t0003	260	46	24	2	15	0	5	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	t0004	259	9	2	6	0	1	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	t0005	259	7	6	1	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	t0006	259	6	5	1	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	t0007	259	4	1	3	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	t0008	260	3	3	0	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	t0009	259	2	2	0	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	t0010	259	2	2	0	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	t0011	260	2	0	0	0	0	2	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	t0012	260	1	0	1	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	t0013	260	1	1	0	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	t0014	260	1	0	0	1	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	t0015	260	1	0	0	1	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	t0016	260	1	0	0	0	0	1	copy fasta	CCDC154	chr16	1429383	1449556
CCDC157_chr22_30352007_30383673	0/1	t0001	2220	150	41	18	70	3	17	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	t0002	2220	145	24	25	74	7	15	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	1/0	t0003	2220	52	5	14	22	4	6	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	t0004	2220	40	6	6	21	2	5	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	t0005	2220	9	8	1	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	t0006	2220	6	0	5	0	1	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	t0007	2220	5	0	0	5	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	t0008	2220	4	0	0	4	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	t0009	2220	4	4	0	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	t0010	2220	4	0	4	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	t0011	2220	3	3	0	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	t0012	2220	2	0	1	0	0	1	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	t0013	2220	2	0	2	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	t0014	2220	2	0	0	2	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	t0015	2220	2	2	0	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	t0016	2220	1	0	0	0	1	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	t0017	2220	1	0	1	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	t0018	2220	1	0	0	1	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	t0019	2220	1	0	0	1	0	0	copy fasta	CCDC157	chr22	30352007	30383673