JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC157_chr22_30352007_30383673	0/0	t0020	2220	1	0	1	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	t0021	2220	1	0	0	1	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	t0022	2220	1	0	0	1	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	t0023	2220	1	1	0	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	t0024	2220	1	1	0	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	t0025	2220	1	1	0	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC158_chr4_76308039_76426141	1/1	t0001	425	279	63	35	143	4	32	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	t0002	425	48	4	20	13	6	5	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	t0003	425	7	6	0	0	0	1	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	t0004	425	5	5	0	0	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	t0005	425	3	2	1	0	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	t0006	425	2	2	0	0	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	t0007	425	2	2	0	0	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	t0008	425	1	1	0	0	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	t0009	425	1	1	0	0	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC159_chr19_11341519_11359944	1/1	t0001	156	358	82	68	156	16	34	copy fasta	CCDC159	chr19	11341519	11359944
CCDC15_chr11_124949202_125046489	0/1	t0001	957	81	28	8	32	2	10	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	t0002	957	77	2	20	43	1	11	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	t0003	957	64	4	7	44	3	6	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	1/0	t0004	957	62	9	24	16	5	7	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	t0005	957	22	13	5	1	1	2	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	t0006	957	22	9	9	0	2	2	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	t0007	957	9	9	0	0	0	0	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	t0008	957	4	0	0	4	0	0	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	t0009	957	3	3	0	0	0	0	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	t0010	957	2	0	0	2	0	0	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	t0011	957	2	1	1	0	0	0	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	t0012	957	1	1	0	0	0	0	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	t0013	957	1	1	0	0	0	0	copy fasta	CCDC15	chr11	124949202	125046489
CCDC160_chrX_134232182_134251842	1/0	t0001	1342	92	4	18	56	5	8	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	t0002	1340	81	9	18	40	1	13	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	t0003	1346	54	33	10	6	1	4	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	t0004	1348	19	0	1	17	1	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	t0005	1344	17	12	4	1	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	t0006	1336	10	0	2	8	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/1	t0007	1346	7	0	1	3	1	1	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	t0008	1352	4	0	0	4	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	t0009	1348	3	1	2	0	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	t0010	1350	3	0	0	3	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	t0011	1344	2	0	0	0	0	2	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	t0012	1342	1	0	0	1	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	t0013	1343	1	0	0	1	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	t0014	1345	1	1	0	0	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	t0015	1347	1	1	0	0	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	t0016	1347	1	0	0	1	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	t0017	1349	1	0	0	1	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	t0018	1342	1	0	1	0	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	t0019	1356	1	1	0	0	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	t0020	1341	1	0	0	1	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	t0021	1338	1	0	0	1	0	0	copy fasta	CCDC160	chrX	134232182	134251842