JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC160_chrX_134232182_134251842	0/0	t0022	1340	1	0	0	1	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	t0023	1341	1	0	0	1	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	t0024	1345	1	1	0	0	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	t0025	1346	1	1	0	0	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	t0026	1344	1	0	0	1	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	t0027	1348	1	1	0	0	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	t0028	1351	1	0	0	1	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	t0029	1344	1	1	0	0	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	t0030	1340	1	0	0	0	0	1	copy fasta	CCDC160	chrX	134232182	134251842
CCDC163_chr1_45488866_45505073	0/0	t0001	1658	147	27	26	72	8	14	copy fasta	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	t0002	1657	117	19	25	57	4	12	copy fasta	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	1/1	t0003	1658	58	13	17	10	6	10	copy fasta	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	t0004	1658	26	21	2	3	0	0	copy fasta	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	t0005	1658	25	0	0	19	0	6	copy fasta	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	t0006	1658	10	0	0	10	0	0	copy fasta	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	t0007	1655	6	6	0	0	0	0	copy fasta	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	t0008	1659	3	0	0	2	0	1	copy fasta	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	t0009	1659	2	2	0	0	0	0	copy fasta	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	t0010	1658	2	0	0	2	0	0	copy fasta	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	t0011	1657	2	0	0	2	0	0	copy fasta	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	t0012	1657	2	1	0	0	0	1	copy fasta	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	t0013	1657	1	0	1	0	0	0	copy fasta	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	t0014	1654	1	1	0	0	0	0	copy fasta	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	t0015	1657	1	1	0	0	0	0	copy fasta	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	t0016	1658	1	0	1	0	0	0	copy fasta	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	t0017	1658	1	0	0	0	0	1	copy fasta	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	t0018	1659	1	0	0	0	0	1	copy fasta	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	t0019	1658	1	0	0	1	0	0	copy fasta	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	t0020	1659	1	1	0	0	0	0	copy fasta	CCDC163	chr1	45488866	45505073
CCDC167_chr6_37477938_37504893	0/1	t0001	279	252	85	35	94	7	30	copy fasta	CCDC167	chr6	37477938	37504893
CCDC167_chr6_37477938_37504893	1/0	t0002	279	112	7	14	67	5	18	copy fasta	CCDC167	chr6	37477938	37504893
CCDC167_chr6_37477938_37504893	0/0	t0003	279	18	0	0	18	0	0	copy fasta	CCDC167	chr6	37477938	37504893
CCDC167_chr6_37477938_37504893	0/0	t0004	279	13	4	7	0	0	2	copy fasta	CCDC167	chr6	37477938	37504893
CCDC167_chr6_37477938_37504893	0/0	t0005	279	2	2	0	0	0	0	copy fasta	CCDC167	chr6	37477938	37504893
CCDC167_chr6_37477938_37504893	0/0	t0006	279	1	0	0	1	0	0	copy fasta	CCDC167	chr6	37477938	37504893
CCDC168_chr13_102724367_102764072	1/1	t0001	225	359	85	60	164	12	36	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	t0002	225	1	1	0	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC169_chr13_36225775_36302814	1/1	t0001	514	239	64	36	108	8	21	copy fasta	CCDC169	chr13	36225775	36302814
CCDC169_chr13_36225775_36302814	0/0	t0002	513	117	15	26	49	6	21	copy fasta	CCDC169	chr13	36225775	36302814
CCDC169_chr13_36225775_36302814	0/0	t0003	514	7	6	0	1	0	0	copy fasta	CCDC169	chr13	36225775	36302814
CCDC169_chr13_36225775_36302814	0/0	t0004	514	1	1	0	0	0	0	copy fasta	CCDC169	chr13	36225775	36302814
CCDC170_chr6_151489017_151626193	0/0	t0001	3161	44	2	3	36	2	1	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0002	3161	36	8	9	14	1	4	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0003	3156	34	1	3	30	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0004	3162	25	7	6	3	2	7	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0005	3154	19	0	2	11	1	5	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0006	3154	19	10	2	6	0	1	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0007	3160	17	15	2	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	1/0	t0008	3159	13	5	1	2	0	4	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/1	t0009	3162	11	0	4	0	1	5	copy fasta	CCDC170	chr6	151489017	151626193