JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC170_chr6_151489017_151626193	0/0	t0010	3161	7	0	7	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0011	3160	7	1	2	4	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0012	3160	7	1	3	2	0	1	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0013	3162	6	0	1	4	0	1	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0014	3162	5	3	2	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0015	3155	4	0	0	4	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0016	3158	3	3	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0017	3158	3	0	1	2	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0018	3158	3	3	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0019	3163	2	0	1	0	0	1	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0020	3158	2	0	1	1	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0021	3159	2	2	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0022	3154	2	0	2	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0023	3158	2	2	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0024	3155	2	2	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0025	3157	2	0	0	2	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0026	3155	2	0	0	2	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0027	3159	2	1	0	1	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0028	3158	2	2	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0029	3154	1	0	0	1	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0030	3156	1	0	0	1	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0031	3157	1	0	0	1	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0032	3162	1	0	1	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0033	3161	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0034	3158	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0035	3162	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0036	3160	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0037	3159	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0038	3158	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0039	3158	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0040	3154	1	0	0	0	0	1	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0041	3159	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0042	3164	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0043	3156	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0044	3154	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0045	3153	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0046	3153	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0047	3163	1	0	0	1	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0048	3161	1	0	0	1	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0049	3161	1	0	1	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0050	3161	1	0	1	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0051	3157	1	0	0	1	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0052	3159	1	0	0	0	0	1	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0053	3159	1	0	0	0	1	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0054	3160	1	0	1	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0055	3155	1	0	0	1	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0056	3158	1	0	1	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0057	3156	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0058	3159	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0059	3157	1	0	1	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193