JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC170_chr6_151489017_151626193	0/0	t0060	3154	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0061	3161	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0062	3161	1	0	0	1	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0063	3161	1	0	0	1	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0064	3160	1	0	0	1	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	t0065	3158	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC171_chr9_15548043_15979037	0/1	t0001	2574	85	14	17	39	4	10	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	t0002	2573	68	2	14	42	2	8	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	t0003	2574	31	7	1	15	0	8	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	1/0	t0004	2573	16	9	3	0	0	3	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	t0005	2573	11	11	0	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	t0006	2574	8	7	1	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	t0007	2574	6	6	0	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	t0008	2573	6	0	0	6	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	t0009	2573	5	0	3	1	0	1	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	t0010	2574	5	0	0	5	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	t0011	2573	4	0	4	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	t0012	2574	3	2	1	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	t0013	2573	2	0	1	1	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	t0014	2574	1	1	0	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	t0015	2574	1	1	0	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	t0016	2573	1	0	0	0	0	1	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	t0017	2574	1	1	0	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	t0018	2574	1	1	0	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	t0019	2573	1	0	0	0	0	1	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	t0020	2573	1	0	1	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	t0021	2573	1	0	0	0	0	1	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	t0022	2573	1	0	0	0	0	1	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	t0023	2574	1	0	0	1	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	t0024	2574	1	1	0	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	t0025	2574	1	1	0	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	t0026	2574	1	0	1	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	t0027	2574	1	1	0	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	t0028	2574	1	1	0	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	t0029	2573	1	0	1	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC172_chr10_116319448_116385029	1/1	t0001	903	185	37	35	88	9	14	copy fasta	CCDC172	chr10	116319448	116385029
CCDC172_chr10_116319448_116385029	0/0	t0002	903	43	5	9	28	1	0	copy fasta	CCDC172	chr10	116319448	116385029
CCDC172_chr10_116319448_116385029	0/0	t0003	903	36	11	5	17	0	3	copy fasta	CCDC172	chr10	116319448	116385029
CCDC172_chr10_116319448_116385029	0/0	t0004	903	31	4	4	17	1	5	copy fasta	CCDC172	chr10	116319448	116385029
CCDC172_chr10_116319448_116385029	0/0	t0005	903	23	9	3	8	1	2	copy fasta	CCDC172	chr10	116319448	116385029
CCDC172_chr10_116319448_116385029	0/0	t0006	903	9	9	0	0	0	0	copy fasta	CCDC172	chr10	116319448	116385029
CCDC172_chr10_116319448_116385029	0/0	t0007	903	4	4	0	0	0	0	copy fasta	CCDC172	chr10	116319448	116385029
CCDC172_chr10_116319448_116385029	0/0	t0008	903	2	1	0	1	0	0	copy fasta	CCDC172	chr10	116319448	116385029
CCDC172_chr10_116319448_116385029	0/0	t0009	903	1	1	0	0	0	0	copy fasta	CCDC172	chr10	116319448	116385029
CCDC172_chr10_116319448_116385029	0/0	t0010	903	1	1	0	0	0	0	copy fasta	CCDC172	chr10	116319448	116385029
CCDC172_chr10_116319448_116385029	0/0	t0011	903	1	1	0	0	0	0	copy fasta	CCDC172	chr10	116319448	116385029
CCDC172_chr10_116319448_116385029	0/0	t0012	878	1	0	0	1	0	0	copy fasta	CCDC172	chr10	116319448	116385029
CCDC172_chr10_116319448_116385029	0/0	t0013	903	1	1	0	0	0	0	copy fasta	CCDC172	chr10	116319448	116385029
CCDC174_chr3_14646762_14677655	0/1	t0001	1537	172	19	30	89	8	25	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	t0002	1537	111	20	29	48	4	10	copy fasta	CCDC174	chr3	14646762	14677655