JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC174_chr3_14646762_14677655	1/0	t0003	1537	106	33	13	56	0	3	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	t0004	1537	8	8	0	0	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	t0005	1537	5	0	0	0	0	5	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	t0006	1541	5	0	2	0	0	3	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	t0007	1537	4	2	2	0	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	t0008	1537	4	0	1	3	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	t0009	1537	4	2	2	0	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	t0010	1533	3	0	0	3	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	t0011	1536	3	3	0	0	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	t0012	1537	2	2	0	0	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	t0013	1537	1	0	0	1	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	t0014	1537	1	0	1	0	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	t0015	1537	1	0	0	1	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	t0016	1537	1	0	0	1	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	t0017	1537	1	1	0	0	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC175_chr14_59500067_59581812	1/1	t0001	210	294	84	68	98	12	30	copy fasta	CCDC175	chr14	59500067	59581812
CCDC177_chr14_69564799_69579871	0/1	t0001	2059	188	43	30	80	11	23	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	t0002	2059	36	12	4	17	0	3	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	t0003	2057	35	0	2	24	2	7	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	1/0	t0004	2059	17	13	1	2	0	0	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	t0005	2060	14	2	2	9	0	1	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	t0006	2061	14	0	2	4	0	8	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	t0007	2060	13	1	0	10	1	1	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	t0008	2059	5	5	0	0	0	0	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	t0009	2058	4	0	1	2	0	1	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	t0010	2059	3	1	2	0	0	0	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	t0011	2061	2	0	0	2	0	0	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	t0012	2059	1	0	0	0	0	1	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	t0013	2059	1	1	0	0	0	0	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	t0014	2059	1	0	0	0	0	1	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	t0015	2061	1	1	0	0	0	0	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	t0016	2059	1	1	0	0	0	0	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	t0017	2059	1	1	0	0	0	0	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	t0018	2059	1	1	0	0	0	0	copy fasta	CCDC177	chr14	69564799	69579871
CCDC178_chr18_32932406_33445721	1/1	t0001	817	40	23	5	6	0	4	copy fasta	CCDC178	chr18	32932406	33445721
CCDC178_chr18_32932406_33445721	0/0	t0002	817	17	16	1	0	0	0	copy fasta	CCDC178	chr18	32932406	33445721
CCDC178_chr18_32932406_33445721	0/0	t0003	817	1	1	0	0	0	0	copy fasta	CCDC178	chr18	32932406	33445721
CCDC179_chr11_22841922_22865474	0/1	t0001	642	269	31	42	152	7	36	copy fasta	CCDC179	chr11	22841922	22865474
CCDC179_chr11_22841922_22865474	1/0	t0002	642	164	48	34	61	7	13	copy fasta	CCDC179	chr11	22841922	22865474
CCDC179_chr11_22841922_22865474	0/0	t0003	642	9	9	0	0	0	0	copy fasta	CCDC179	chr11	22841922	22865474
CCDC179_chr11_22841922_22865474	0/0	t0004	642	2	0	0	2	0	0	copy fasta	CCDC179	chr11	22841922	22865474
CCDC179_chr11_22841922_22865474	0/0	t0005	642	1	0	0	0	0	1	copy fasta	CCDC179	chr11	22841922	22865474
CCDC179_chr11_22841922_22865474	0/0	t0006	642	1	0	0	1	0	0	copy fasta	CCDC179	chr11	22841922	22865474
CCDC17_chr1_45615044_45629054	0/1	t0001	377	280	66	44	131	8	30	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	1/0	t0002	377	140	24	36	61	4	14	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	t0003	377	13	0	0	13	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	t0004	377	1	0	0	1	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC180_chr9_97302659_97383751	1/1	t0001	2087	94	12	17	47	6	10	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	t0002	2089	91	3	21	57	1	9	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	t0003	2087	54	24	7	23	0	0	copy fasta	CCDC180	chr9	97302659	97383751