Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADAM28_chr8_24289069_24364014	0/0	t0006	4705	11	8	3	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	1/0	t0007	4692	8	4	0	0	0	3	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0008	4705	6	0	0	6	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0009	4705	5	0	4	0	1	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0010	4681	5	0	5	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0011	4710	3	0	0	3	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0012	4706	3	0	0	3	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0013	4706	3	3	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0014	4705	3	0	0	3	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0015	4706	2	0	0	2	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0016	4705	2	0	2	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0017	4703	2	2	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0018	4705	2	0	0	2	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0019	4706	1	0	0	0	0	1	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0020	4711	1	1	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0021	4705	1	0	0	1	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0022	4705	1	0	0	1	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0023	4705	1	1	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0024	4705	1	0	0	1	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0025	4705	1	0	0	1	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0026	4706	1	1	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0027	4701	1	1	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0028	4697	1	0	0	0	1	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0029	4705	1	0	1	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0030	4722	1	0	0	1	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0031	4705	1	0	0	1	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0032	4705	1	0	0	1	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0033	4707	1	1	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0034	4706	1	0	0	1	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0035	4705	1	0	0	1	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0036	4705	1	0	0	0	0	1	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0037	4705	1	0	1	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0038	4703	1	1	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0039	4705	1	0	0	0	0	1	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0040	4705	1	1	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0041	4707	1	1	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0042	4706	1	1	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0043	4705	1	0	1	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0044	4705	1	1	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0045	4706	1	1	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0046	4705	1	0	0	0	0	1	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	t0047	4705	1	0	0	1	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM29_chr4_174913358_174983180	0/0	t0001	865	135	15	25	82	2	11	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	t0002	865	106	45	13	33	0	15	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/1	t0003	865	40	3	20	2	3	11	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	1/0	t0004	863	28	5	7	11	1	3	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	t0005	863	5	3	0	0	0	2	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	t0006	865	3	3	0	0	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	t0007	865	3	0	0	3	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	t0008	865	2	2	0	0	0	0	copy fasta	ADAM29	chr4	174913358	174983180