JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC180_chr9_97302659_97383751	0/0	t0004	2088	33	3	13	6	2	9	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	t0005	2089	25	0	0	25	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	t0006	2087	9	9	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	t0007	2087	9	9	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	t0008	2087	8	0	0	8	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	t0009	2089	7	6	1	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	t0010	2087	6	1	2	1	1	1	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	t0011	2087	4	3	1	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	t0012	2087	4	4	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	t0013	2087	3	3	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	t0014	2087	2	2	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	t0015	2088	2	2	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	t0016	2089	1	0	0	1	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	t0017	2087	1	0	0	1	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	t0018	2088	1	1	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	t0019	2088	1	0	1	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	t0020	2088	1	0	0	1	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	t0021	2087	1	1	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	t0022	2087	1	1	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	t0023	2087	1	0	0	1	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	t0024	2087	1	1	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	t0025	2097	1	0	0	0	0	1	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	t0026	2089	1	0	0	1	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	t0027	2089	1	0	1	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	t0028	2089	1	1	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC181_chr1_169389870_169432474	1/0	t0001	388	293	71	59	111	12	39	copy fasta	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/1	t0002	388	58	17	11	23	2	4	copy fasta	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	t0003	388	7	0	4	0	2	1	copy fasta	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	t0004	388	4	0	2	2	0	0	copy fasta	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	t0005	388	1	1	0	0	0	0	copy fasta	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	t0006	388	1	1	0	0	0	0	copy fasta	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	t0007	388	1	1	0	0	0	0	copy fasta	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	t0008	388	1	1	0	0	0	0	copy fasta	CCDC181	chr1	169389870	169432474
CCDC182_chr17_57739495_57750299	1/1	t0001	344	267	53	49	127	8	28	copy fasta	CCDC182	chr17	57739495	57750299
CCDC182_chr17_57739495_57750299	0/0	t0002	344	182	43	28	85	6	20	copy fasta	CCDC182	chr17	57739495	57750299
CCDC182_chr17_57739495_57750299	0/0	t0003	344	5	0	5	0	0	0	copy fasta	CCDC182	chr17	57739495	57750299
CCDC183_chr9_136791338_136812741	0/1	t0001	112	208	19	48	109	10	21	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	1/0	t0002	112	188	75	34	47	6	25	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	t0003	112	2	2	0	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC184_chr12_48178644_48190926	1/1	t0001	1699	179	37	33	90	3	14	copy fasta	CCDC184	chr12	48178644	48190926
CCDC184_chr12_48178644_48190926	0/0	t0002	1699	82	26	8	41	2	5	copy fasta	CCDC184	chr12	48178644	48190926
CCDC184_chr12_48178644_48190926	0/0	t0003	1699	77	12	15	35	3	12	copy fasta	CCDC184	chr12	48178644	48190926
CCDC184_chr12_48178644_48190926	0/0	t0004	1699	40	8	13	1	3	15	copy fasta	CCDC184	chr12	48178644	48190926
CCDC184_chr12_48178644_48190926	0/0	t0005	1699	10	8	2	0	0	0	copy fasta	CCDC184	chr12	48178644	48190926
CCDC184_chr12_48178644_48190926	0/0	t0006	1699	5	0	0	5	0	0	copy fasta	CCDC184	chr12	48178644	48190926
CCDC184_chr12_48178644_48190926	0/0	t0007	1699	4	0	2	0	2	0	copy fasta	CCDC184	chr12	48178644	48190926
CCDC184_chr12_48178644_48190926	0/0	t0008	1699	2	0	0	2	0	0	copy fasta	CCDC184	chr12	48178644	48190926
CCDC184_chr12_48178644_48190926	0/0	t0009	1699	1	1	0	0	0	0	copy fasta	CCDC184	chr12	48178644	48190926
CCDC184_chr12_48178644_48190926	0/0	t0010	1699	1	0	0	1	0	0	copy fasta	CCDC184	chr12	48178644	48190926
CCDC184_chr12_48178644_48190926	0/0	t0011	1699	1	0	0	1	0	0	copy fasta	CCDC184	chr12	48178644	48190926