JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC184_chr12_48178644_48190926	0/0	t0012	1699	1	1	0	0	0	0	copy fasta	CCDC184	chr12	48178644	48190926
CCDC184_chr12_48178644_48190926	0/0	t0013	1699	1	0	1	0	0	0	copy fasta	CCDC184	chr12	48178644	48190926
CCDC184_chr12_48178644_48190926	0/0	t0014	1699	1	1	0	0	0	0	copy fasta	CCDC184	chr12	48178644	48190926
CCDC184_chr12_48178644_48190926	0/0	t0015	1699	1	1	0	0	0	0	copy fasta	CCDC184	chr12	48178644	48190926
CCDC184_chr12_48178644_48190926	0/0	t0016	1699	1	0	0	0	1	0	copy fasta	CCDC184	chr12	48178644	48190926
CCDC184_chr12_48178644_48190926	0/0	t0017	1710	1	0	0	1	0	0	copy fasta	CCDC184	chr12	48178644	48190926
CCDC184_chr12_48178644_48190926	0/0	t0018	1699	1	0	0	1	0	0	copy fasta	CCDC184	chr12	48178644	48190926
CCDC184_chr12_48178644_48190926	0/0	t0019	1699	1	1	0	0	0	0	copy fasta	CCDC184	chr12	48178644	48190926
CCDC185_chr1_223388415_223400465	1/1	t0001	180	389	94	65	175	14	39	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	t0002	180	5	0	0	5	0	0	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	t0003	180	1	0	0	0	0	1	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	t0004	180	1	0	1	0	0	0	copy fasta	CCDC185	chr1	223388415	223400465
CCDC186_chr10_114115862_114179203	1/1	t0001	4532	101	28	25	35	2	9	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0002	4537	71	17	16	29	2	7	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0003	4537	22	0	10	8	2	2	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0004	4537	17	4	5	0	3	5	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0005	4532	12	5	2	0	2	3	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0006	4533	6	0	0	6	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0007	4538	6	5	1	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0008	4537	6	6	0	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0009	4532	3	0	0	3	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0010	4537	3	3	0	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0011	4531	3	0	0	3	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0012	4528	2	0	2	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0013	4538	2	2	0	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0014	4538	2	2	0	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0015	4532	1	1	0	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0016	4532	1	0	1	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0017	4538	1	1	0	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0018	4537	1	1	0	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0019	4532	1	0	0	1	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0020	4537	1	1	0	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0021	4537	1	1	0	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0022	4538	1	1	0	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0023	4538	1	0	1	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0024	4537	1	1	0	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0025	4537	1	1	0	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0026	4537	1	1	0	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0027	4537	1	0	0	1	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0028	4532	1	0	0	0	0	1	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0029	4532	1	0	0	0	1	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0030	4532	1	0	1	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0031	4532	1	0	0	0	0	1	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0032	4532	1	0	0	1	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0033	4537	1	1	0	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0034	4537	1	1	0	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0035	4532	1	0	0	1	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	t0036	4537	1	1	0	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC187_chr9_136244973_136309094	0/0	t0001	3769	61	2	11	42	3	3	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0002	3769	35	1	9	15	3	7	copy fasta	CCDC187	chr9	136244973	136309094