JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC187_chr9_136244973_136309094	0/0	t0003	3886	21	1	9	7	1	3	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0004	3886	20	1	5	11	0	3	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0005	3886	11	9	2	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0006	3971	10	0	0	4	0	6	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0007	3801	8	7	1	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0008	3886	7	0	0	7	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0009	3971	7	0	0	7	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0010	3886	6	0	4	0	0	2	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0011	3886	5	3	2	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0012	3971	5	0	0	4	0	1	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0013	3886	5	5	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0014	4141	4	0	0	0	2	2	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0015	3971	4	0	0	4	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0016	3886	4	3	1	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0017	3854	4	3	1	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0018	3801	4	4	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0019	3801	3	0	1	2	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0020	3886	3	0	0	3	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0021	3854	3	0	1	0	0	2	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0022	3918	3	0	0	2	0	1	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0023	3748	3	3	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0024	3886	3	2	1	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0025	3886	3	0	0	3	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0026	3971	3	0	0	0	0	3	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0027	3600	3	2	1	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0028	3769	3	0	1	2	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0029	3769	3	0	0	3	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0030	3801	3	0	0	3	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0031	3886	2	0	1	1	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0032	3886	2	1	1	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0033	3801	2	0	0	2	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0034	3886	2	2	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0035	3971	2	0	0	2	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0036	3886	2	0	0	2	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0037	3971	2	0	0	2	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0038	4003	2	0	0	2	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0039	3886	2	0	0	2	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0040	3600	2	2	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0041	3769	2	0	0	2	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0042	4225	2	0	0	2	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0043	3769	2	0	0	1	0	1	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0044	3515	2	0	1	0	0	1	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0045	3854	2	0	0	2	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0046	3970	2	0	0	0	0	2	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0047	3769	2	2	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0048	3950	2	2	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0049	3886	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0050	3886	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0051	3971	1	0	1	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0052	3854	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094