JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC187_chr9_136244973_136309094	0/0	t0153	3939	1	0	0	0	0	1	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0154	3971	1	0	0	1	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	t0155	3886	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC188_chr22_20143416_20156055	1/0	t0001	268	322	75	52	150	16	28	copy fasta	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	t0002	268	40	14	5	19	0	2	copy fasta	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/1	t0003	268	40	0	11	16	2	10	copy fasta	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	t0004	268	3	3	0	0	0	0	copy fasta	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	t0005	268	1	1	0	0	0	0	copy fasta	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	t0006	268	1	1	0	0	0	0	copy fasta	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	t0007	322	1	0	0	1	0	0	copy fasta	CCDC188	chr22	20143416	20156055
CCDC18_chr1_93175724_93283730	1/1	t0001	385	249	40	46	129	9	23	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	t0002	385	52	33	11	2	3	3	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	t0003	385	7	7	0	0	0	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	t0004	385	5	0	5	0	0	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	t0005	385	1	1	0	0	0	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	t0006	385	1	1	0	0	0	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	t0007	385	1	0	0	1	0	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC190_chr1_162846020_162866175	0/0	t0001	3926	86	2	16	45	3	20	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	1/0	t0002	3926	66	10	5	43	0	7	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0003	3926	45	19	8	10	3	5	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0004	3930	42	3	3	33	1	2	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0005	3926	17	0	4	12	0	1	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/1	t0006	3930	15	1	5	1	4	3	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0007	3927	14	2	1	9	0	2	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0008	3927	13	0	0	13	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0009	3926	11	2	3	3	2	1	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0010	3927	10	0	1	6	0	3	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0011	3931	8	0	1	7	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0012	3926	7	0	3	4	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0013	3930	7	0	0	7	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0014	3927	6	1	1	4	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0015	3925	6	0	3	3	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0016	3926	6	6	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0017	3929	6	0	5	0	0	1	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0018	3926	5	1	2	2	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0019	3925	5	2	2	1	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0020	3928	4	0	0	4	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0021	3927	4	4	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0022	3930	4	4	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0023	3931	4	1	3	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0024	3926	3	2	1	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0025	3927	3	3	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0026	3926	3	0	0	3	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0027	3926	3	3	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0028	3930	3	3	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0029	3929	3	3	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0030	3928	2	2	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0031	3926	2	0	2	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0032	3925	2	0	1	0	1	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0033	3926	2	2	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175