JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC190_chr1_162846020_162866175	0/0	t0034	3927	2	0	1	1	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0035	3927	2	0	1	1	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0036	3926	2	2	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0037	3926	2	2	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0038	3926	2	2	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0039	3926	2	2	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0040	3926	1	0	0	1	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0041	3926	1	1	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0042	3926	1	0	1	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0043	3926	1	1	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0044	3926	1	1	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0045	3927	1	0	1	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0046	3927	1	1	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0047	3928	1	0	0	1	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0048	3930	1	0	1	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0049	3926	1	1	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0050	3928	1	0	0	0	0	1	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0051	3926	1	0	0	1	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0052	3926	1	0	0	0	0	1	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0053	3930	1	0	0	1	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0054	3928	1	1	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0055	3927	1	1	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0056	3926	1	0	1	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0057	3928	1	1	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0058	3926	1	0	0	0	0	1	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0059	3927	1	0	0	1	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0060	3926	1	0	1	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0061	3927	1	1	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0062	3926	1	1	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0063	3932	1	0	0	1	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0064	3929	1	0	0	1	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0065	3932	1	1	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0066	3925	1	0	0	0	1	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0067	3926	1	0	0	1	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0068	3927	1	1	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0069	3929	1	1	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0070	3926	1	0	0	0	1	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0071	3929	1	1	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	t0072	3931	1	0	1	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC191_chr3_113959137_114061526	0/1	t0001	1079	313	67	51	151	13	30	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	t0002	1079	54	7	15	28	1	3	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	t0003	1079	5	5	0	0	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	1/0	t0004	1079	4	3	0	0	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	t0005	1079	1	0	0	1	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	t0006	1079	1	1	0	0	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	t0007	1079	1	0	0	0	0	1	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	t0008	1079	1	1	0	0	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC192_chr5_127698391_127946507	1/1	t0001	95	234	70	48	80	8	26	copy fasta	CCDC192	chr5	127698391	127946507
CCDC194_chr19_17382196_17399196	0/1	t0001	3344	133	10	42	54	10	16	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0002	3345	73	26	11	25	1	10	copy fasta	CCDC194	chr19	17382196	17399196