JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC194_chr19_17382196_17399196	1/0	t0003	3352	56	2	4	46	2	1	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0004	3353	11	2	0	9	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0005	3353	11	2	2	6	0	1	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0006	3345	10	2	2	6	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0007	3345	8	0	2	4	0	2	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0008	3354	7	0	1	0	0	6	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0009	3352	6	4	2	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0010	3352	6	6	0	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0011	3354	5	0	3	1	0	1	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0012	3352	5	3	1	0	1	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0013	3346	4	1	0	3	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0014	3346	4	1	0	2	0	1	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0015	3353	4	4	0	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0016	3355	3	3	0	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0017	3354	3	2	0	1	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0018	3351	3	0	0	2	0	1	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0019	3353	3	3	0	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0020	3344	3	0	0	0	0	3	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0021	3344	3	0	0	3	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0022	3352	3	3	0	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0023	3353	2	0	0	2	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0024	3357	2	2	0	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0025	3352	2	2	0	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0026	3355	2	2	0	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0027	3352	2	2	0	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0028	3352	2	0	2	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0029	3344	2	0	1	0	0	1	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0030	3352	2	2	0	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0031	3354	2	0	0	0	0	2	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0032	3344	2	1	0	1	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0033	3345	2	0	0	2	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0034	3353	1	1	0	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0035	3355	1	1	0	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0036	3354	1	1	0	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0037	3352	1	1	0	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0038	3352	1	0	0	1	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0039	3355	1	1	0	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0040	3354	1	1	0	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0041	3354	1	0	1	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0042	3353	1	0	0	1	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0043	3354	1	0	0	0	0	1	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0044	3352	1	0	0	0	0	1	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0045	3347	1	0	0	1	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0046	3346	1	0	0	1	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0047	3347	1	0	0	1	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0048	3353	1	0	1	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0049	3353	1	0	0	1	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0050	3346	1	0	0	0	0	1	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0051	3353	1	0	0	1	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0052	3354	1	1	0	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196