JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC194_chr19_17382196_17399196	0/0	t0053	3330	1	0	0	1	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0054	3355	1	0	0	1	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0055	3346	1	0	0	1	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0056	3345	1	1	0	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0057	3345	1	0	0	1	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0058	3344	1	0	0	1	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0059	3352	1	1	0	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0060	3346	1	0	0	1	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	t0061	3344	1	0	1	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC196_chr14_66481371_66503553	1/1	t0001	214	330	79	63	144	10	32	copy fasta	CCDC196	chr14	66481371	66503553
CCDC196_chr14_66481371_66503553	0/0	t0002	214	33	9	9	9	0	6	copy fasta	CCDC196	chr14	66481371	66503553
CCDC196_chr14_66481371_66503553	0/0	t0003	214	1	0	0	1	0	0	copy fasta	CCDC196	chr14	66481371	66503553
CCDC197_chr14_93992301_94013863	0/0	t0001	456	293	66	39	147	7	34	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/1	t0002	456	55	10	23	2	9	10	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	t0003	456	21	4	11	2	1	3	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	t0004	456	8	7	1	0	0	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	t0005	456	7	6	1	0	0	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	t0006	456	3	3	0	0	0	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	t0007	456	1	0	0	1	0	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	t0008	456	1	1	0	0	0	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	t0009	456	1	0	0	0	0	1	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	t0010	456	1	0	0	0	1	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	t0011	456	1	0	1	0	0	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	t0012	456	1	1	0	0	0	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC198_chr14_57464300_57498857	0/0	t0001	2198	257	32	55	130	10	30	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	0/0	t0002	2198	38	9	11	7	3	8	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	1/0	t0003	2198	34	30	3	0	0	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	0/0	t0004	2198	13	12	1	0	0	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	0/1	t0005	2198	3	0	1	0	1	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	0/0	t0006	2198	2	2	0	0	0	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	0/0	t0007	2198	1	0	0	1	0	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	0/0	t0008	2198	1	1	0	0	0	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	0/0	t0009	2198	1	0	1	0	0	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	0/0	t0010	2198	1	1	0	0	0	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	0/0	t0011	2198	1	1	0	0	0	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	0/0	t0012	2198	1	0	1	0	0	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	0/0	t0013	2198	1	1	0	0	0	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	0/0	t0014	2198	1	0	1	0	0	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	0/0	t0015	2198	1	1	0	0	0	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	0/0	t0016	2198	1	0	0	1	0	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	0/0	t0017	2198	1	0	0	1	0	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	0/0	t0018	2198	1	1	0	0	0	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	0/0	t0019	2198	1	1	0	0	0	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	0/0	t0020	2198	1	1	0	0	0	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	0/0	t0021	2198	1	1	0	0	0	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC200_chr17_43216420_43233623	1/1	t0001	221	174	61	29	52	3	27	copy fasta	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	t0002	221	160	23	45	68	7	17	copy fasta	CCDC200	chr17	43216420	43233623
CCDC201_chr7_45854994_45878082	1/1	t0001	3167	156	20	34	67	10	23	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	t0002	3168	77	8	20	39	4	6	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	t0003	3167	48	0	6	41	0	1	copy fasta	CCDC201	chr7	45854994	45878082