JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC201_chr7_45854994_45878082	0/0	t0004	3168	45	4	8	24	2	7	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	t0005	3167	41	20	3	12	0	6	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	t0006	3167	12	0	0	12	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	t0007	3168	11	10	1	0	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	t0008	3163	10	10	0	0	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	t0009	3168	10	0	7	0	2	1	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	t0010	3167	5	5	0	0	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	t0011	3167	5	5	0	0	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	t0012	3194	4	4	0	0	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	t0013	3167	4	3	1	0	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	t0014	3168	2	2	0	0	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	t0015	3168	2	0	0	2	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	t0016	3167	2	0	0	2	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	t0017	3167	1	0	1	0	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	t0018	3167	1	0	0	0	0	1	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	t0019	3167	1	1	0	0	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	t0020	3167	1	0	0	1	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	t0021	3167	1	0	1	0	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	t0022	3167	1	0	1	0	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	t0023	3167	1	0	0	0	0	1	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	t0024	3167	1	0	0	1	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	t0025	3167	1	0	1	0	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	t0026	3168	1	1	0	0	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	t0027	3163	1	1	0	0	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	t0028	3157	1	0	0	1	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC22_chrX_49230470_49255520	1/1	t0001	427	269	58	46	119	12	32	copy fasta	CCDC22	chrX	49230470	49255520
CCDC22_chrX_49230470_49255520	0/0	t0002	427	23	19	4	0	0	0	copy fasta	CCDC22	chrX	49230470	49255520
CCDC22_chrX_49230470_49255520	0/0	t0003	427	1	0	0	1	0	0	copy fasta	CCDC22	chrX	49230470	49255520
CCDC22_chrX_49230470_49255520	0/0	t0004	426	1	0	0	1	0	0	copy fasta	CCDC22	chrX	49230470	49255520
CCDC22_chrX_49230470_49255520	0/0	t0005	427	1	1	0	0	0	0	copy fasta	CCDC22	chrX	49230470	49255520
CCDC22_chrX_49230470_49255520	0/0	t0006	427	1	0	0	0	1	0	copy fasta	CCDC22	chrX	49230470	49255520
CCDC24_chr1_43986599_44001528	1/0	t0001	549	251	82	32	113	5	18	copy fasta	CCDC24	chr1	43986599	44001528
CCDC24_chr1_43986599_44001528	0/1	t0002	549	149	10	38	75	7	18	copy fasta	CCDC24	chr1	43986599	44001528
CCDC24_chr1_43986599_44001528	0/0	t0003	549	3	0	0	3	0	0	copy fasta	CCDC24	chr1	43986599	44001528
CCDC24_chr1_43986599_44001528	0/0	t0004	549	2	2	0	0	0	0	copy fasta	CCDC24	chr1	43986599	44001528
CCDC24_chr1_43986599_44001528	0/0	t0005	549	1	0	0	1	0	0	copy fasta	CCDC24	chr1	43986599	44001528
CCDC25_chr8_27728316_27777640	0/0	t0001	3013	128	28	20	63	3	14	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/1	t0002	3013	79	17	26	16	4	15	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0003	3001	51	6	8	33	1	3	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0004	3014	15	0	1	12	0	2	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0005	3013	11	0	0	11	0	0	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0006	3001	10	0	0	10	0	0	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0007	3001	7	0	0	7	0	0	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0008	3001	6	6	0	0	0	0	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0009	3014	6	0	0	6	0	0	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0010	3013	6	6	0	0	0	0	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0011	3013	6	5	1	0	0	0	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	1/0	t0012	3001	5	4	0	0	0	0	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0013	3013	5	5	0	0	0	0	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0014	3001	5	5	0	0	0	0	copy fasta	CCDC25	chr8	27728316	27777640