Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADAM29_chr4_174913358_174983180	0/0	t0009	865	2	2	0	0	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	t0010	865	1	1	0	0	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	t0011	863	1	1	0	0	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	t0012	865	1	0	1	0	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	t0013	865	1	1	0	0	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	t0014	865	1	1	0	0	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	t0015	865	1	0	0	1	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM2_chr8_39738735_39843227	0/1	t0001	403	327	94	59	132	14	27	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	t0002	403	1	0	0	0	0	1	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	t0003	403	1	0	1	0	0	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM30_chr1_119888533_119901515	1/1	t0001	611	318	58	68	150	16	24	copy fasta	ADAM30	chr1	119888533	119901515
ADAM30_chr1_119888533_119901515	0/0	t0002	611	67	36	10	7	2	12	copy fasta	ADAM30	chr1	119888533	119901515
ADAM30_chr1_119888533_119901515	0/0	t0003	611	2	2	0	0	0	0	copy fasta	ADAM30	chr1	119888533	119901515
ADAM30_chr1_119888533_119901515	0/0	t0004	611	1	0	0	1	0	0	copy fasta	ADAM30	chr1	119888533	119901515
ADAM32_chr8_39102734_39289917	0/1	t0001	161	134	51	27	41	3	11	copy fasta	ADAM32	chr8	39102734	39289917
ADAM32_chr8_39102734_39289917	0/0	t0002	161	123	15	31	61	9	7	copy fasta	ADAM32	chr8	39102734	39289917
ADAM33_chr20_3662975_3687010	0/1	t0001	995	142	11	34	70	6	20	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0002	995	73	15	14	31	5	8	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	1/0	t0003	995	70	8	5	49	4	3	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0004	995	31	5	10	9	3	4	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0005	995	25	9	4	5	0	7	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0006	995	23	16	0	7	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0007	995	21	3	7	7	0	4	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0008	995	16	0	2	14	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0009	995	6	4	2	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0010	995	5	2	0	3	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0011	995	5	5	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0012	995	5	3	0	2	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0013	995	4	0	1	3	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0014	995	3	3	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0015	995	3	3	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0016	995	3	3	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0017	995	3	3	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0018	995	3	0	0	3	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0019	995	2	0	0	2	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0020	995	2	0	0	1	0	1	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0021	995	2	1	0	1	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0022	995	1	1	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0023	995	1	0	1	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0024	995	1	0	0	1	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0025	995	1	1	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0026	995	1	0	1	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0027	995	1	0	0	0	0	1	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0028	995	1	0	0	1	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0029	995	1	0	0	1	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0030	995	1	0	0	1	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0031	995	1	0	0	1	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0032	995	1	0	1	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0033	995	1	0	0	1	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0034	984	1	0	0	1	0	0	copy fasta	ADAM33	chr20	3662975	3687010