JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC25_chr8_27728316_27777640	0/0	t0015	3013	4	0	3	0	0	1	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0016	3001	3	3	0	0	0	0	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0017	3013	2	0	2	0	0	0	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0018	3013	2	2	0	0	0	0	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0019	3013	2	0	0	2	0	0	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0020	3013	2	0	2	0	0	0	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0021	3013	1	0	0	0	0	1	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0022	3001	1	1	0	0	0	0	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0023	3013	1	1	0	0	0	0	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0024	3013	1	0	0	0	0	1	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0025	3013	1	0	0	0	0	1	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0026	3001	1	0	0	0	0	1	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0027	3001	1	0	0	0	0	1	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0028	3001	1	0	0	1	0	0	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0029	3013	1	0	0	1	0	0	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0030	3013	1	0	0	1	0	0	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0031	3013	1	1	0	0	0	0	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0032	3014	1	0	0	1	0	0	copy fasta	CCDC25	chr8	27728316	27777640
CCDC25_chr8_27728316_27777640	0/0	t0033	3013	1	0	1	0	0	0	copy fasta	CCDC25	chr8	27728316	27777640
CCDC27_chr1_3747450_3776645	1/1	t0001	155	426	99	83	174	18	50	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	t0002	155	1	0	1	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	t0003	155	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC28A_chr6_138768769_138798319	0/0	t0001	693	209	27	37	106	9	30	copy fasta	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/1	t0002	693	74	36	17	17	1	2	copy fasta	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	t0003	693	37	12	0	25	0	0	copy fasta	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	t0004	693	18	17	1	0	0	0	copy fasta	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	t0005	693	12	0	2	10	0	0	copy fasta	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	t0006	693	7	1	6	0	0	0	copy fasta	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	t0007	693	3	0	0	3	0	0	copy fasta	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	1/0	t0008	693	1	0	0	0	0	0	copy fasta	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	t0009	693	1	1	0	0	0	0	copy fasta	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	t0010	693	1	0	1	0	0	0	copy fasta	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	t0011	693	1	0	0	1	0	0	copy fasta	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	t0012	693	1	1	0	0	0	0	copy fasta	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	t0013	693	1	1	0	0	0	0	copy fasta	CCDC28A	chr6	138768769	138798319
CCDC28B_chr1_32195595_32210387	1/1	t0001	278	414	90	72	194	14	42	copy fasta	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	t0002	278	2	0	0	0	0	2	copy fasta	CCDC28B	chr1	32195595	32210387
CCDC30_chr1_42458286_42662190	1/1	t0001	3867	85	19	20	34	3	7	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0002	3866	49	1	5	37	2	4	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0003	3867	34	6	8	17	2	1	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0004	3868	23	3	1	16	0	3	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0005	3867	21	13	2	5	0	1	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0006	3868	20	5	10	0	2	3	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0007	3868	7	2	2	3	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0008	3865	7	7	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0009	3867	7	4	1	0	0	2	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0010	3867	5	0	0	4	0	1	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0011	3869	5	0	0	0	2	3	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0012	3867	5	1	2	0	0	2	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0013	3867	4	0	1	0	0	3	copy fasta	CCDC30	chr1	42458286	42662190