JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC30_chr1_42458286_42662190	0/0	t0014	3868	4	1	1	2	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0015	3869	4	2	0	1	0	1	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0016	3866	3	0	1	2	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0017	3868	3	3	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0018	3866	2	0	0	1	0	1	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0019	3866	2	2	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0020	3867	2	0	0	0	0	2	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0021	3867	2	0	0	2	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0022	3869	2	2	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0023	3868	1	0	0	1	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0024	3867	1	0	0	0	0	1	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0025	3867	1	0	1	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0026	3865	1	1	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0027	3865	1	0	0	0	0	1	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0028	3868	1	0	1	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0029	3868	1	1	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0030	3867	1	0	0	1	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0031	3866	1	0	0	1	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0032	3866	1	0	0	1	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0033	3867	1	0	0	0	0	1	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0034	3867	1	0	0	0	1	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0035	3866	1	0	1	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0036	3868	1	1	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0037	3866	1	1	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0038	3868	1	0	1	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0039	3868	1	1	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0040	3867	1	0	0	0	0	1	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0041	3867	1	1	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0042	3868	1	1	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0043	3865	1	0	0	1	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0044	3866	1	1	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0045	3866	1	1	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0046	3868	1	1	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0047	3869	1	1	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0048	3869	1	1	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0049	3870	1	1	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	t0050	3868	1	0	0	1	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC32_chr15_40548099_40570042	0/0	t0001	916	54	4	18	17	5	10	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0002	936	29	1	1	22	0	5	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0003	942	27	5	1	20	1	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0004	936	23	0	10	9	2	2	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0005	950	21	0	2	17	0	2	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0006	928	18	17	1	0	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0007	940	18	1	5	12	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0008	946	17	0	1	10	2	4	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0009	918	16	12	2	2	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0010	948	15	1	1	11	0	2	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0011	944	15	2	0	12	0	1	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0012	952	12	1	4	6	0	1	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0013	940	12	0	1	7	0	4	copy fasta	CCDC32	chr15	40548099	40570042