JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC32_chr15_40548099_40570042	0/0	t0014	938	11	0	0	7	1	3	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0015	932	10	9	0	1	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0016	938	9	5	0	3	0	1	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0017	934	9	7	1	1	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0018	958	8	0	3	4	0	1	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0019	954	7	0	2	5	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0020	942	6	0	3	2	0	1	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0021	956	5	2	2	1	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0022	934	5	0	1	1	0	3	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0023	966	4	0	0	4	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0024	924	4	0	0	4	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0025	932	4	0	0	4	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/1	t0026	940	3	0	0	2	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0027	934	3	3	0	0	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0028	930	3	2	1	0	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0029	944	3	0	1	1	0	1	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0030	964	2	1	0	1	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0031	950	2	2	0	0	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0032	948	2	2	0	0	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0033	936	2	1	1	0	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0034	984	1	0	0	1	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0035	972	1	0	0	1	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0036	968	1	1	0	0	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0037	966	1	1	0	0	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0038	962	1	0	0	1	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0039	954	1	1	0	0	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	1/0	t0040	952	1	0	0	0	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0041	950	1	1	0	0	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0042	948	1	0	1	0	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0043	942	1	1	0	0	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0044	940	1	0	1	0	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0045	938	1	0	0	0	1	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0046	936	1	1	0	0	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0047	936	1	0	1	0	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0048	934	1	1	0	0	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0049	932	1	1	0	0	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0050	930	1	1	0	0	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0051	930	1	1	0	0	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0052	937	1	0	1	0	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0053	936	1	0	0	1	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	t0054	930	1	0	0	0	0	1	copy fasta	CCDC32	chr15	40548099	40570042
CCDC33_chr15_74231326_74341141	1/0	t0001	483	140	30	22	66	4	17	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/1	t0002	483	133	49	23	40	6	14	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	t0003	483	12	0	0	11	0	1	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	t0004	483	1	0	1	0	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	t0005	483	1	0	0	1	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	t0006	483	1	1	0	0	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC34_chr11_27333512_27368215	0/1	t0001	331	341	80	58	149	14	39	copy fasta	CCDC34	chr11	27333512	27368215
CCDC34_chr11_27333512_27368215	0/0	t0002	331	7	5	1	0	0	1	copy fasta	CCDC34	chr11	27333512	27368215
CCDC34_chr11_27333512_27368215	1/0	t0003	331	4	3	0	0	0	0	copy fasta	CCDC34	chr11	27333512	27368215