JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC34_chr11_27333512_27368215	0/0	t0004	331	4	3	1	0	0	0	copy fasta	CCDC34	chr11	27333512	27368215
CCDC34_chr11_27333512_27368215	0/0	t0005	331	1	1	0	0	0	0	copy fasta	CCDC34	chr11	27333512	27368215
CCDC34_chr11_27333512_27368215	0/0	t0006	331	1	0	0	1	0	0	copy fasta	CCDC34	chr11	27333512	27368215
CCDC38_chr12_95862048_95947614	1/0	t0001	227	243	84	47	77	8	26	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/1	t0002	227	97	2	13	65	4	12	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/0	t0003	227	8	8	0	0	0	0	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/0	t0004	227	2	0	2	0	0	0	copy fasta	CCDC38	chr12	95862048	95947614
CCDC39_chr3_180609008_180684489	1/1	t0001	1023	189	45	34	73	12	23	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	t0002	1023	20	18	2	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	t0003	1024	8	2	2	3	0	1	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	t0004	1023	8	6	1	0	1	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	t0005	1023	6	5	1	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	t0006	1023	5	0	4	0	1	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	t0007	1023	4	1	3	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	t0008	1023	3	3	0	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	t0009	1023	3	3	0	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	t0010	1023	2	0	2	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	t0011	1023	2	1	1	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	t0012	1023	1	0	0	1	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	t0013	1023	1	1	0	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	t0014	1023	1	0	0	1	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	t0015	1023	1	1	0	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC3_chr10_12891625_13006713	0/0	t0001	1934	145	19	41	65	4	16	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/1	t0002	1934	75	1	18	43	6	6	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	t0003	1933	60	8	9	32	3	8	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	t0004	1933	48	14	8	22	1	3	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	t0005	1932	10	10	0	0	0	0	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	t0006	1935	8	5	3	0	0	0	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	t0007	1933	7	7	0	0	0	0	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	1/0	t0008	1935	5	4	0	0	0	0	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	t0009	1933	3	3	0	0	0	0	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	t0010	1935	3	3	0	0	0	0	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	t0011	1933	3	0	0	2	0	1	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	t0012	1933	3	0	0	2	0	1	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	t0013	1933	2	2	0	0	0	0	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	t0014	1933	2	2	0	0	0	0	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	t0015	1946	2	1	1	0	0	0	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	t0016	1933	2	0	0	0	0	2	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	t0017	1933	2	2	0	0	0	0	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	t0018	1934	2	0	0	1	0	1	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	t0019	1932	1	1	0	0	0	0	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	t0020	1933	1	1	0	0	0	0	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	t0021	1934	1	1	0	0	0	0	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	t0022	1933	1	1	0	0	0	0	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	t0023	1934	1	0	0	1	0	0	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	t0024	1934	1	0	0	1	0	0	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	t0025	1934	1	0	0	0	0	1	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	t0026	1933	1	1	0	0	0	0	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	t0027	1933	1	0	0	1	0	0	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	t0028	1933	1	0	0	0	0	1	copy fasta	CCDC3	chr10	12891625	13006713