JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC40_chr17_80031642_80105613	1/0	t0001	860	186	35	42	82	6	20	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/1	t0002	860	76	31	12	21	4	7	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	t0003	860	66	9	10	42	1	4	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	t0004	860	24	9	5	0	3	7	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	t0005	860	8	0	1	4	0	3	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	t0006	860	5	4	1	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	t0007	860	5	0	0	5	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	t0008	860	3	0	1	0	2	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	t0009	860	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	t0010	860	1	0	0	0	0	1	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	t0011	860	1	0	0	1	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	t0012	860	1	0	0	1	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	t0013	860	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC42_chr17_8724935_8749836	0/0	t0001	423	149	15	40	67	9	18	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	1/1	t0002	423	143	34	28	64	2	13	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	t0003	423	62	7	7	38	5	5	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	t0004	423	20	17	2	0	0	1	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	t0005	423	16	15	1	0	0	0	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	t0006	423	11	4	3	4	0	0	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	t0007	423	2	1	0	1	0	0	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	t0008	423	2	0	2	0	0	0	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	t0009	423	2	2	0	0	0	0	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	t0010	423	1	0	0	0	0	1	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	t0011	423	1	0	1	0	0	0	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	t0012	423	1	1	0	0	0	0	copy fasta	CCDC42	chr17	8724935	8749836
CCDC43_chr17_44672440_44694776	1/1	t0001	1440	268	62	64	104	13	23	copy fasta	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	t0002	1439	52	6	5	34	1	6	copy fasta	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	t0003	1441	23	10	4	8	0	1	copy fasta	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	t0004	1440	8	8	0	0	0	0	copy fasta	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	t0005	1439	4	3	1	0	0	0	copy fasta	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	t0006	1440	2	0	0	2	0	0	copy fasta	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	t0007	1440	1	1	0	0	0	0	copy fasta	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	t0008	1438	1	0	1	0	0	0	copy fasta	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	t0009	1440	1	0	1	0	0	0	copy fasta	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	t0010	1440	1	1	0	0	0	0	copy fasta	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	t0011	1440	1	1	0	0	0	0	copy fasta	CCDC43	chr17	44672440	44694776
CCDC47_chr17_63740255_63778597	0/0	t0001	1832	146	21	31	73	6	15	copy fasta	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	1/0	t0002	1832	100	2	16	65	6	10	copy fasta	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/1	t0003	1832	90	55	13	9	6	6	copy fasta	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	t0004	1832	4	4	0	0	0	0	copy fasta	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	t0005	1832	2	2	0	0	0	0	copy fasta	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	t0006	1832	2	2	0	0	0	0	copy fasta	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	t0007	1832	1	0	1	0	0	0	copy fasta	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	t0008	1832	1	0	0	0	0	1	copy fasta	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	t0009	1832	1	1	0	0	0	0	copy fasta	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	t0010	1832	1	1	0	0	0	0	copy fasta	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	t0011	1832	1	0	0	1	0	0	copy fasta	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	t0012	1832	1	1	0	0	0	0	copy fasta	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	t0013	1832	1	0	1	0	0	0	copy fasta	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	t0014	1832	1	1	0	0	0	0	copy fasta	CCDC47	chr17	63740255	63778597