JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC50_chr3_191324394_191403659	0/0	t0001	7173	90	33	7	41	2	7	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0002	7181	57	9	18	20	2	8	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0003	7177	47	0	12	32	0	3	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0004	7181	37	4	3	26	0	4	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/1	t0005	7177	25	2	16	0	1	5	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	1/0	t0006	7181	19	0	2	10	0	6	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0007	7181	18	0	0	18	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0008	7181	12	0	2	10	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0009	7177	11	0	0	11	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0010	7181	8	7	1	0	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0011	7177	6	0	0	6	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0012	7181	6	0	3	0	1	2	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0013	7181	6	6	0	0	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0014	7181	6	0	3	0	0	3	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0015	7173	4	0	0	4	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0016	7173	4	4	0	0	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0017	7181	4	4	0	0	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0018	7181	4	4	0	0	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0019	7177	4	0	0	0	0	4	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0020	7181	3	2	1	0	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0021	7173	3	3	0	0	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0022	7173	2	0	0	2	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0023	7181	2	2	0	0	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0024	7181	2	2	0	0	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0025	7177	2	0	2	0	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0026	7177	2	0	2	0	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0027	7173	1	0	0	1	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0028	7181	1	0	1	0	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0029	7181	1	0	0	1	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0030	7181	1	1	0	0	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0031	7181	1	0	0	1	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0032	7181	1	0	1	0	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0033	7181	1	1	0	0	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0034	7181	1	0	0	0	1	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0035	7181	1	0	0	0	0	1	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0036	7181	1	0	0	1	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0037	7181	1	0	0	0	0	1	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0038	7181	1	0	0	1	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0039	7181	1	0	0	1	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0040	7181	1	0	0	1	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0041	7181	1	1	0	0	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0042	7177	1	0	0	0	0	1	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0043	7181	1	0	0	1	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0044	7181	1	1	0	0	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0045	7181	1	0	0	1	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0046	7173	1	0	0	1	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0047	7181	1	0	0	0	1	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	t0048	7181	1	0	0	0	0	1	copy fasta	CCDC50	chr3	191324394	191403659
CCDC51_chr3_48427173_48445119	0/1	t0001	376	236	57	46	91	13	28	copy fasta	CCDC51	chr3	48427173	48445119
CCDC51_chr3_48427173_48445119	1/0	t0002	376	137	20	26	71	5	14	copy fasta	CCDC51	chr3	48427173	48445119