JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC51_chr3_48427173_48445119	0/0	t0003	376	8	8	0	0	0	0	copy fasta	CCDC51	chr3	48427173	48445119
CCDC51_chr3_48427173_48445119	0/0	t0004	376	2	2	0	0	0	0	copy fasta	CCDC51	chr3	48427173	48445119
CCDC51_chr3_48427173_48445119	0/0	t0005	376	2	2	0	0	0	0	copy fasta	CCDC51	chr3	48427173	48445119
CCDC51_chr3_48427173_48445119	0/0	t0006	376	1	1	0	0	0	0	copy fasta	CCDC51	chr3	48427173	48445119
CCDC54_chr3_107372439_107383635	1/1	t0001	211	395	93	76	162	16	46	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	0/0	t0002	211	2	1	1	0	0	0	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	0/0	t0003	211	2	0	1	0	0	1	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	0/0	t0004	211	1	0	0	0	0	1	copy fasta	CCDC54	chr3	107372439	107383635
CCDC57_chr17_82096470_82217842	1/0	t0001	279	165	49	32	53	5	25	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/1	t0002	279	58	25	8	11	6	7	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	t0003	278	26	11	9	1	1	4	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	t0004	279	1	0	0	1	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	t0005	279	1	1	0	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	t0006	279	1	0	1	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC59_chr12_82347303_82363387	0/1	t0001	860	270	54	54	116	14	31	copy fasta	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	1/0	t0002	860	32	17	5	1	4	4	copy fasta	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	t0003	860	24	2	0	21	0	1	copy fasta	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	t0004	860	10	10	0	0	0	0	copy fasta	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	t0005	860	4	4	0	0	0	0	copy fasta	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	t0006	860	2	0	0	2	0	0	copy fasta	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	t0007	860	1	0	1	0	0	0	copy fasta	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	t0008	860	1	0	0	1	0	0	copy fasta	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	t0009	860	1	1	0	0	0	0	copy fasta	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	t0010	860	1	0	0	1	0	0	copy fasta	CCDC59	chr12	82347303	82363387
CCDC60_chr12_119329729_119546040	1/0	t0001	774	118	37	29	27	8	16	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/1	t0002	774	65	8	16	33	5	2	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	t0003	774	39	22	9	5	2	1	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	t0004	774	29	4	12	11	1	1	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	t0005	774	1	0	0	1	0	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	t0006	774	1	0	0	1	0	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	t0007	774	1	1	0	0	0	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	t0008	774	1	1	0	0	0	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	t0009	774	1	1	0	0	0	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC61_chr19_45990467_46023616	1/1	t0001	279	427	96	82	183	16	48	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	t0002	279	1	0	0	1	0	0	copy fasta	CCDC61	chr19	45990467	46023616
CCDC62_chr12_122769572_122832528	0/1	t0001	1248	190	43	40	80	9	17	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	t0002	1248	63	15	6	33	0	9	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	t0003	1248	21	16	0	0	1	4	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	1/0	t0004	1247	13	5	1	2	0	4	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	t0005	1248	4	0	2	0	2	0	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	t0006	1248	2	2	0	0	0	0	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	t0007	1248	2	0	1	0	0	1	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	t0008	1248	1	0	0	0	0	1	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	t0009	1248	1	0	0	1	0	0	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	t0010	1248	1	1	0	0	0	0	copy fasta	CCDC62	chr12	122769572	122832528
CCDC63_chr12_110841987_110912535	0/1	t0001	275	185	37	34	77	11	25	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	1/0	t0002	275	68	18	11	28	4	6	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	t0003	275	29	14	4	3	1	7	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	t0004	275	3	2	1	0	0	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	t0005	275	2	0	2	0	0	0	copy fasta	CCDC63	chr12	110841987	110912535