JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC63_chr12_110841987_110912535	0/0	t0006	275	1	1	0	0	0	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC65_chr12_48899133_48926576	1/1	t0001	338	241	76	38	85	9	31	copy fasta	CCDC65	chr12	48899133	48926576
CCDC65_chr12_48899133_48926576	0/0	t0002	339	110	5	29	64	1	11	copy fasta	CCDC65	chr12	48899133	48926576
CCDC65_chr12_48899133_48926576	0/0	t0003	340	7	0	4	1	2	0	copy fasta	CCDC65	chr12	48899133	48926576
CCDC65_chr12_48899133_48926576	0/0	t0004	338	7	7	0	0	0	0	copy fasta	CCDC65	chr12	48899133	48926576
CCDC65_chr12_48899133_48926576	0/0	t0005	339	4	1	1	0	0	2	copy fasta	CCDC65	chr12	48899133	48926576
CCDC65_chr12_48899133_48926576	0/0	t0006	339	3	3	0	0	0	0	copy fasta	CCDC65	chr12	48899133	48926576
CCDC65_chr12_48899133_48926576	0/0	t0007	338	3	0	0	3	0	0	copy fasta	CCDC65	chr12	48899133	48926576
CCDC65_chr12_48899133_48926576	0/0	t0008	338	1	0	0	1	0	0	copy fasta	CCDC65	chr12	48899133	48926576
CCDC66_chr3_56552175_56626837	1/1	t0001	288	177	31	28	86	12	18	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	t0002	289	95	19	16	45	0	15	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	t0003	290	50	18	2	24	0	6	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	t0004	289	22	7	1	14	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	t0005	291	14	9	2	3	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	t0006	288	5	2	1	2	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	t0007	290	2	0	0	1	0	1	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	t0008	290	2	0	0	0	0	2	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	t0009	289	2	2	0	0	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	t0010	288	1	1	0	0	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	t0011	290	1	1	0	0	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	t0012	290	1	0	0	1	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC68_chr18_54896509_54964461	0/1	t0001	3080	65	2	15	37	3	7	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0002	3077	64	2	9	38	3	12	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0003	3080	28	5	4	11	0	8	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0004	3081	23	9	7	1	3	3	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0005	3079	21	0	10	0	5	6	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0006	3080	15	7	3	5	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0007	3076	9	9	0	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0008	3080	9	0	0	9	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0009	3080	8	8	0	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0010	3080	8	7	1	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0011	3077	7	0	3	0	0	4	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0012	3081	7	7	0	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	1/0	t0013	3078	5	4	0	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0014	3081	5	4	1	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0015	3079	5	0	0	5	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0016	3079	4	3	1	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0017	3081	3	0	3	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0018	3081	3	3	0	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0019	3080	3	3	0	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0020	3082	2	2	0	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0021	3077	2	2	0	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0022	3078	2	2	0	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0023	3076	2	0	0	2	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0024	3078	2	1	0	0	0	1	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0025	3079	2	0	0	2	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0026	3081	1	0	1	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0027	3077	1	0	1	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0028	3076	1	1	0	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0029	3077	1	1	0	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461