JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC68_chr18_54896509_54964461	0/0	t0030	3081	1	0	0	0	0	1	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0031	3076	1	1	0	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0032	3080	1	0	0	0	0	1	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0033	3075	1	0	1	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0034	3081	1	1	0	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0035	3081	1	0	0	1	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0036	3081	1	0	0	0	0	1	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0037	3081	1	0	1	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0038	3080	1	0	0	1	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0039	3080	1	0	0	1	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0040	3081	1	1	0	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0041	3081	1	1	0	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0042	3079	1	0	0	1	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0043	3080	1	0	1	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0044	3079	1	0	0	1	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0045	3076	1	0	0	1	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0046	3077	1	1	0	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	t0047	3079	1	1	0	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC69_chr5_151176052_151229092	1/0	t0001	2508	62	1	8	43	1	8	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0002	2508	60	6	7	43	0	4	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0003	2507	59	3	24	19	6	7	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0004	2505	36	13	10	8	1	4	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/1	t0005	2508	32	3	0	28	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0006	2505	23	13	4	0	1	5	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0007	2505	20	11	3	3	0	3	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0008	2505	18	1	9	3	4	1	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0009	2508	15	4	0	9	1	1	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0010	2507	14	7	0	2	0	5	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0011	2507	9	1	0	7	1	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0012	2505	7	0	0	6	1	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0013	2507	7	5	0	2	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0014	2508	5	0	0	5	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0015	2507	5	2	0	3	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0016	2507	5	4	1	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0017	2505	4	3	0	0	0	1	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0018	2505	3	3	0	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0019	2504	3	0	1	0	2	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0020	2507	3	3	0	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0021	2505	2	0	1	1	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0022	2508	2	0	0	1	0	1	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0023	2508	2	0	0	2	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0024	2505	2	2	0	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0025	2508	2	2	0	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0026	2504	2	0	2	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0027	2507	2	2	0	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0028	2508	2	2	0	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0029	2508	1	0	0	1	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0030	2508	1	1	0	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0031	2505	1	0	0	0	0	1	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0032	2505	1	1	0	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092