JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC69_chr5_151176052_151229092	0/0	t0033	2505	1	0	1	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0034	2505	1	0	0	1	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0035	2505	1	0	1	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0036	2508	1	0	0	0	0	1	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0037	2508	1	0	0	1	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0038	2505	1	0	1	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0039	2507	1	0	0	1	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0040	2507	1	0	0	1	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0041	2507	1	0	0	0	0	1	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0042	2507	1	1	0	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0043	2507	1	1	0	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0044	2504	1	0	1	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0045	2507	1	1	0	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0046	2505	1	0	0	0	0	1	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0047	2505	1	1	0	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	t0048	2507	1	1	0	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC6_chr10_59783747_59911556	0/1	t0001	4301	92	14	24	37	5	11	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0002	4301	73	16	8	41	1	7	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0003	4302	45	12	9	10	5	9	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0004	4302	21	19	2	0	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0005	4302	12	0	1	9	0	2	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0006	4300	9	8	1	0	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0007	4301	7	1	3	0	3	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0008	4301	3	0	2	0	0	1	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0009	4302	2	1	1	0	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0010	4302	2	0	0	2	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0011	4301	2	2	0	0	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0012	4302	1	0	0	1	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0013	4302	1	1	0	0	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0014	4301	1	1	0	0	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0015	4301	1	1	0	0	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0016	4301	1	1	0	0	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0017	4302	1	1	0	0	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0018	4301	1	0	0	1	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0019	4301	1	1	0	0	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	1/0	t0020	4303	1	0	0	0	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0021	4301	1	1	0	0	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0022	4301	1	1	0	0	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0023	4301	1	0	1	0	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0024	4301	1	1	0	0	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0025	4301	1	0	0	1	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0026	4298	1	1	0	0	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0027	4298	1	1	0	0	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0028	4298	1	1	0	0	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0029	4300	1	1	0	0	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0030	4302	1	1	0	0	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	t0031	4298	1	1	0	0	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC70_chr13_51856969_51871232	1/1	t0001	494	408	89	70	190	15	42	copy fasta	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	t0002	494	11	0	6	0	3	2	copy fasta	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	t0003	494	5	4	1	0	0	0	copy fasta	CCDC70	chr13	51856969	51871232