Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADAM33_chr20_3662975_3687010	0/0	t0035	995	1	1	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	t0036	995	1	1	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM7_chr8_24436026_24514565	0/1	t0001	1103	183	51	36	68	7	20	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	t0002	1103	125	16	22	71	6	10	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	t0003	1103	16	2	9	0	1	4	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	t0004	1101	10	9	1	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	t0005	1103	9	7	2	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	1/0	t0006	1103	4	3	0	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	t0007	1103	3	3	0	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	t0008	1103	3	2	0	0	0	1	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	t0009	1103	1	0	0	1	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	t0010	1103	1	0	0	1	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	t0011	1103	1	0	0	1	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	t0012	1103	1	0	1	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	t0013	1103	1	0	0	0	0	1	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	t0014	1103	1	1	0	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	t0015	1103	1	0	1	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM8_chr10_133257423_133281868	0/1	t0001	785	272	36	61	129	15	30	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	1/0	t0002	785	77	37	10	23	1	5	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	t0003	785	32	23	6	0	0	3	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	t0004	785	2	0	2	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	t0005	785	1	0	1	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	t0006	785	1	1	0	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	t0007	785	1	1	0	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM9_chr8_38991973_39110261	0/1	t0001	1653	315	70	60	132	10	42	copy fasta	ADAM9	chr8	38991973	39110261
ADAM9_chr8_38991973_39110261	1/0	t0002	1653	15	14	0	0	0	0	copy fasta	ADAM9	chr8	38991973	39110261
ADAM9_chr8_38991973_39110261	0/0	t0003	1653	1	1	0	0	0	0	copy fasta	ADAM9	chr8	38991973	39110261
ADAM9_chr8_38991973_39110261	0/0	t0004	1653	1	1	0	0	0	0	copy fasta	ADAM9	chr8	38991973	39110261
ADAMDEC1_chr8_24379285_24411013	0/0	t0001	936	151	43	31	59	4	14	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	1/1	t0002	936	115	13	28	50	8	14	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	t0003	936	85	6	7	61	4	7	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	t0004	936	32	7	6	18	0	1	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	t0005	935	6	6	0	0	0	0	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	t0006	936	5	3	1	1	0	0	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	t0007	936	4	3	1	0	0	0	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	t0008	936	2	2	0	0	0	0	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	t0009	936	1	1	0	0	0	0	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	t0010	936	1	0	0	1	0	0	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	t0011	936	1	1	0	0	0	0	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	t0012	936	1	1	0	0	0	0	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMTS10_chr19_8575240_8615715	0/1	t0001	939	176	20	30	98	4	23	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	1/0	t0002	940	113	37	16	31	8	20	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	t0003	941	28	1	13	11	2	1	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	t0004	939	19	17	2	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	t0005	941	16	3	4	4	0	5	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	t0006	940	6	3	0	3	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	t0007	940	5	0	4	1	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	t0008	940	3	3	0	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	t0009	940	3	2	1	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	t0010	939	2	2	0	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715