JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC70_chr13_51856969_51871232	0/0	t0004	494	2	2	0	0	0	0	copy fasta	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	t0005	494	1	1	0	0	0	0	copy fasta	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	t0006	494	1	0	1	0	0	0	copy fasta	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	t0007	494	1	0	0	1	0	0	copy fasta	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	t0008	494	1	0	0	1	0	0	copy fasta	CCDC70	chr13	51856969	51871232
CCDC71L_chr7_106649360_106666158	0/0	t0001	6092	132	6	15	98	2	11	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	1/0	t0002	6092	85	4	18	39	9	14	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0003	6092	67	1	28	29	3	6	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0004	6091	24	20	2	0	0	2	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0005	6092	16	13	1	0	1	1	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0006	6093	14	14	0	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0007	6092	13	12	1	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0008	6092	7	0	5	2	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0009	6093	6	5	1	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0010	6093	5	5	0	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0011	6092	5	0	0	5	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0012	6091	5	0	1	0	1	3	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0013	6092	4	0	0	4	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0014	6092	4	0	0	4	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0015	6093	3	0	3	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0016	6092	3	0	0	3	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/1	t0017	6092	3	0	2	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0018	6092	3	0	3	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0019	6093	2	2	0	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0020	6093	2	2	0	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0021	6092	2	0	0	2	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0022	6093	2	1	1	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0023	6092	1	0	0	1	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0024	6092	1	0	0	1	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0025	6092	1	1	0	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0026	6092	1	0	0	1	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0027	6092	1	0	0	0	1	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0028	6093	1	1	0	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0029	6093	1	1	0	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0030	6092	1	0	0	1	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0031	6092	1	0	1	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0032	6092	1	0	1	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0033	6092	1	0	0	0	0	1	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0034	6092	1	1	0	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0035	6092	1	1	0	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0036	6092	1	0	1	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0037	6092	1	1	0	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0038	6092	1	1	0	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0039	6091	1	1	0	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0040	6091	1	0	0	0	1	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0041	6092	1	0	0	0	0	1	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0042	6092	1	0	0	1	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0043	6092	1	0	1	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0044	6092	1	0	0	1	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	t0045	6092	1	0	0	1	0	0	copy fasta	CCDC71L	chr7	106649360	106666158