JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC80_chr3_112591797_112646143	0/0	t0046	9440	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0047	9440	1	0	0	0	1	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0048	9436	1	0	1	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0049	9440	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0050	9450	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0051	9450	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0052	9446	1	0	1	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0053	9449	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0054	9475	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0055	9449	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0056	9456	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0057	9446	1	0	0	0	0	1	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0058	9446	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0059	9446	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0060	9446	1	0	1	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0061	9446	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0062	9446	1	0	1	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0063	9447	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0064	9446	1	0	0	0	0	1	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0065	9449	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0066	9455	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0067	9456	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0068	9456	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0069	9457	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0070	9449	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0071	9449	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0072	9455	1	0	1	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0073	9450	1	0	1	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0074	9449	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0075	9449	1	0	0	0	0	1	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0076	9443	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0077	9447	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0078	9448	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0079	9452	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0080	9459	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0081	9446	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0082	9446	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0083	9444	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0084	9436	1	0	1	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0085	9440	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0086	9444	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0087	9446	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0088	9446	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0089	9446	1	0	0	0	0	1	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0090	9446	1	0	1	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0091	9449	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0092	9449	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0093	9449	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0094	9456	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0095	9456	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143