JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC80_chr3_112591797_112646143	0/0	t0096	9457	1	0	1	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0097	9431	1	0	0	0	0	1	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0098	9446	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0099	9450	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0100	9450	1	0	0	0	0	1	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0101	9450	1	0	0	0	0	1	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0102	9446	1	0	1	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0103	9457	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0104	9455	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0105	9446	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0106	9446	1	0	1	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0107	9450	1	0	0	0	1	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0108	9441	1	0	0	0	0	1	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0109	9441	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0110	9440	1	0	1	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0111	9450	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0112	9455	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0113	9446	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0114	9446	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0115	9446	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0116	9456	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0117	9457	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0118	9457	1	0	1	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0119	9443	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0120	9431	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0121	9446	1	0	1	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0122	9447	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	t0123	9444	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC81_chr11_86369887_86428106	0/1	t0001	669	263	50	47	128	7	30	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	1/0	t0002	669	83	11	20	40	3	8	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	t0003	669	40	23	4	8	2	3	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	t0004	669	9	0	0	9	0	0	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	t0005	669	6	1	1	0	0	4	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	t0006	669	1	0	0	1	0	0	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	t0007	669	1	0	0	0	0	1	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	t0008	669	1	1	0	0	0	0	copy fasta	CCDC81	chr11	86369887	86428106
CCDC82_chr11_96347773_96394912	1/1	t0001	1081	372	83	64	166	16	41	copy fasta	CCDC82	chr11	96347773	96394912
CCDC82_chr11_96347773_96394912	0/0	t0002	1081	3	2	0	0	0	1	copy fasta	CCDC82	chr11	96347773	96394912
CCDC82_chr11_96347773_96394912	0/0	t0003	1081	2	2	0	0	0	0	copy fasta	CCDC82	chr11	96347773	96394912
CCDC82_chr11_96347773_96394912	0/0	t0004	1081	2	2	0	0	0	0	copy fasta	CCDC82	chr11	96347773	96394912
CCDC82_chr11_96347773_96394912	0/0	t0005	1081	1	1	0	0	0	0	copy fasta	CCDC82	chr11	96347773	96394912
CCDC82_chr11_96347773_96394912	0/0	t0006	1081	1	1	0	0	0	0	copy fasta	CCDC82	chr11	96347773	96394912
CCDC82_chr11_96347773_96394912	0/0	t0007	1099	1	1	0	0	0	0	copy fasta	CCDC82	chr11	96347773	96394912
CCDC83_chr11_85850383_85925013	1/1	t0001	734	280	76	46	119	7	30	copy fasta	CCDC83	chr11	85850383	85925013
CCDC83_chr11_85850383_85925013	0/0	t0002	734	38	4	8	19	1	6	copy fasta	CCDC83	chr11	85850383	85925013
CCDC83_chr11_85850383_85925013	0/0	t0003	734	9	9	0	0	0	0	copy fasta	CCDC83	chr11	85850383	85925013
CCDC83_chr11_85850383_85925013	0/0	t0004	734	2	2	0	0	0	0	copy fasta	CCDC83	chr11	85850383	85925013
CCDC83_chr11_85850383_85925013	0/0	t0005	734	2	1	1	0	0	0	copy fasta	CCDC83	chr11	85850383	85925013
CCDC83_chr11_85850383_85925013	0/0	t0006	734	1	1	0	0	0	0	copy fasta	CCDC83	chr11	85850383	85925013
CCDC83_chr11_85850383_85925013	0/0	t0007	734	1	0	1	0	0	0	copy fasta	CCDC83	chr11	85850383	85925013