JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC83_chr11_85850383_85925013	0/0	t0008	734	1	1	0	0	0	0	copy fasta	CCDC83	chr11	85850383	85925013
CCDC85A_chr2_56178990_56391172	0/0	t0001	2453	166	16	30	91	6	23	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	t0002	2456	63	18	12	22	2	9	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	1/1	t0003	2453	24	4	5	11	0	2	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	t0004	2456	16	13	1	1	0	1	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	t0005	2453	8	6	2	0	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	t0006	2455	4	4	0	0	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	t0007	2453	4	4	0	0	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	t0008	2456	3	2	1	0	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	t0009	2455	3	3	0	0	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	t0010	2453	1	1	0	0	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	t0011	2456	1	1	0	0	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	t0012	2455	1	1	0	0	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	t0013	2456	1	0	1	0	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	t0014	2453	1	1	0	0	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	t0015	2456	1	1	0	0	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	t0016	2453	1	1	0	0	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	t0017	2453	1	0	0	1	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	t0018	2453	1	0	0	1	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	t0019	2456	1	0	0	1	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	t0020	2456	1	0	0	0	0	1	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	t0021	2453	1	1	0	0	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	t0022	2453	1	1	0	0	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	t0023	2456	1	0	1	0	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	t0024	2453	1	1	0	0	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	t0025	2456	1	1	0	0	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	t0026	2456	1	0	1	0	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85B_chr11_65885673_65896635	1/1	t0001	355	404	72	74	198	12	46	copy fasta	CCDC85B	chr11	65885673	65896635
CCDC85B_chr11_65885673_65896635	0/0	t0002	355	18	16	2	0	0	0	copy fasta	CCDC85B	chr11	65885673	65896635
CCDC85B_chr11_65885673_65896635	0/0	t0003	355	5	5	0	0	0	0	copy fasta	CCDC85B	chr11	65885673	65896635
CCDC85B_chr11_65885673_65896635	0/0	t0004	355	1	1	0	0	0	0	copy fasta	CCDC85B	chr11	65885673	65896635
CCDC85C_chr14_99495190_99609207	0/1	t0001	15301	64	11	10	33	4	5	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0002	15304	44	11	3	19	4	7	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0003	15304	25	3	11	4	3	4	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0004	15304	18	0	0	18	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0005	15302	9	9	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	1/0	t0006	15305	5	4	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0007	15304	5	5	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0008	15304	4	1	2	0	1	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0009	15301	4	0	1	1	0	2	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0010	15301	3	3	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0011	15300	3	3	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0012	15299	3	0	3	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0013	15301	3	3	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0014	15326	3	3	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0015	15301	3	0	0	3	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0016	15301	3	0	2	1	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0017	15301	3	0	0	0	3	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0018	15330	3	3	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0019	15301	3	3	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207