JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC85C_chr14_99495190_99609207	0/0	t0020	15303	3	2	1	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0021	15303	3	1	0	2	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0022	15304	2	0	2	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0023	15301	2	0	0	0	0	2	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0024	15301	2	0	0	2	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0025	15301	2	0	2	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0026	15301	2	2	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0027	15301	2	0	0	2	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0028	15301	2	2	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0029	15301	2	0	2	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0030	15304	2	0	0	0	0	2	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0031	15304	2	0	0	2	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0032	15304	2	0	0	2	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0033	15304	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0034	15299	1	0	1	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0035	15327	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0036	15316	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0037	15301	1	0	0	1	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0038	15301	1	0	0	1	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0039	15303	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0040	15326	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0041	15288	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0042	15315	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0043	15326	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0044	15301	1	0	0	1	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0045	15301	1	0	0	0	1	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0046	15301	1	0	0	1	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0047	15301	1	0	0	1	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0048	15301	1	0	0	1	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0049	15301	1	0	0	0	0	1	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0050	15316	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0051	15301	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0052	15301	1	0	0	0	0	1	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0053	15304	1	0	1	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0054	15301	1	0	0	1	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0055	15301	1	0	1	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0056	15301	1	0	0	1	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0057	15301	1	0	0	1	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0058	15301	1	0	0	0	1	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0059	15301	1	0	0	0	0	1	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0060	15303	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0061	15301	1	0	1	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0062	15302	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0063	15327	1	0	0	1	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0064	15301	1	0	0	0	0	1	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0065	15301	1	0	0	1	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0066	15301	1	0	0	0	0	1	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0067	15301	1	0	1	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0068	15338	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0069	15337	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207