JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC85C_chr14_99495190_99609207	0/0	t0070	15337	1	0	1	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0071	15303	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0072	15301	1	0	0	1	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0073	15304	1	0	0	0	0	1	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0074	15304	1	0	0	1	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0075	15303	1	0	0	0	0	1	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0076	15304	1	0	0	1	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0077	15304	1	0	0	0	0	1	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0078	15304	1	0	1	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0079	15304	1	0	1	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0080	15303	1	0	1	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0081	15303	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0082	15303	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0083	15303	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0084	15303	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0085	15303	1	0	0	1	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0086	15304	1	0	0	1	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0087	15304	1	0	0	1	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0088	15304	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0089	15304	1	0	1	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0090	15304	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0091	15304	1	0	0	0	1	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0092	15304	1	0	1	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0093	15304	1	0	0	1	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0094	15305	1	0	1	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0095	15304	1	0	1	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	t0096	15304	1	0	0	1	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC86_chr11_60837113_60856081	0/0	t0001	769	147	9	25	88	5	20	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	0/1	t0002	769	135	42	22	54	6	10	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	0/0	t0003	769	50	14	20	5	3	8	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	0/0	t0004	769	36	11	8	13	2	2	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	0/0	t0005	768	14	13	1	0	0	0	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	1/0	t0006	769	7	6	0	0	0	0	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	0/0	t0007	769	6	0	0	6	0	0	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	0/0	t0008	769	4	0	0	4	0	0	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	0/0	t0009	769	2	0	0	0	2	0	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	0/0	t0010	768	1	1	0	0	0	0	copy fasta	CCDC86	chr11	60837113	60856081
CCDC87_chr11_66585176_66598063	1/1	t0001	339	385	86	60	184	12	41	copy fasta	CCDC87	chr11	66585176	66598063
CCDC87_chr11_66585176_66598063	0/0	t0002	339	1	0	0	0	0	1	copy fasta	CCDC87	chr11	66585176	66598063
CCDC88A_chr2_55282842_55424856	0/0	t0001	4130	80	16	9	48	2	5	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0002	4130	58	3	15	25	4	11	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/1	t0003	4130	39	0	0	30	0	8	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0004	4136	18	5	0	10	0	3	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0005	4130	16	1	1	14	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0006	4132	8	8	0	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0007	4130	8	1	1	5	1	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0008	4130	7	1	1	2	1	2	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0009	4136	7	7	0	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0010	4132	6	5	1	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0011	4140	6	5	1	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856