JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC88A_chr2_55282842_55424856	0/0	t0012	4134	6	0	2	4	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0013	4130	5	0	0	5	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0014	4126	5	0	2	0	3	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0015	4132	5	4	1	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0016	4134	4	4	0	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0017	4136	4	4	0	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0018	4134	3	3	0	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0019	4128	3	0	3	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	1/0	t0020	4136	2	0	0	0	0	1	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0021	4130	2	0	2	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0022	4132	2	2	0	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0023	4130	1	1	0	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0024	4130	1	0	0	1	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0025	4143	1	0	0	1	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0026	4134	1	1	0	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0027	4130	1	0	0	1	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0028	4130	1	0	0	1	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0029	4130	1	0	0	1	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0030	4132	1	1	0	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0031	4130	1	0	0	1	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0032	4134	1	1	0	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0033	4136	1	1	0	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0034	4130	1	0	0	1	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0035	4132	1	1	0	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0036	4130	1	1	0	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0037	4130	1	0	1	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0038	4126	1	0	1	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0039	4132	1	1	0	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0040	4130	1	1	0	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0041	4130	1	0	0	1	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0042	4136	1	0	0	1	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0043	4130	1	0	1	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	t0044	4130	1	0	0	0	1	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88B_chr11_64335204_64362534	1/1	t0001	504	283	83	42	121	8	27	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	t0002	504	67	2	16	40	3	6	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	t0003	504	16	1	7	2	0	6	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	t0004	504	15	1	7	0	2	5	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	t0005	504	5	5	0	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	t0006	504	4	0	0	1	2	1	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	t0007	504	3	2	1	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	t0008	504	2	2	0	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	t0009	504	2	0	1	0	0	1	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	t0010	504	1	0	0	0	1	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	t0011	504	1	0	0	1	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	t0012	504	1	0	0	1	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88C_chr14_91266323_91422820	0/1	t0001	1433	182	54	45	54	8	20	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	1/0	t0002	1433	54	10	2	31	0	10	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	t0003	1433	11	2	7	0	1	1	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	t0004	1433	6	0	1	2	0	3	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	t0005	1433	4	3	1	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820