JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC88C_chr14_91266323_91422820	0/0	t0006	1433	4	0	1	0	0	3	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	t0007	1433	3	3	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	t0008	1433	3	3	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	t0009	1433	3	3	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	t0010	1433	3	3	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	t0011	1433	2	0	2	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	t0012	1433	2	0	0	2	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	t0013	1451	1	0	0	0	1	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	t0014	1433	1	0	1	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	t0015	1433	1	0	0	0	0	1	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	t0016	1433	1	1	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	t0017	1433	1	1	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	t0018	1433	1	0	0	1	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	t0019	1433	1	1	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC89_chr11_85678848_85691195	0/1	t0001	1224	214	46	28	109	8	22	copy fasta	CCDC89	chr11	85678848	85691195
CCDC89_chr11_85678848_85691195	1/0	t0002	1224	135	18	27	66	8	15	copy fasta	CCDC89	chr11	85678848	85691195
CCDC89_chr11_85678848_85691195	0/0	t0003	1224	44	1	4	35	1	3	copy fasta	CCDC89	chr11	85678848	85691195
CCDC89_chr11_85678848_85691195	0/0	t0004	1224	26	25	1	0	0	0	copy fasta	CCDC89	chr11	85678848	85691195
CCDC89_chr11_85678848_85691195	0/0	t0005	1224	13	0	9	4	0	0	copy fasta	CCDC89	chr11	85678848	85691195
CCDC89_chr11_85678848_85691195	0/0	t0006	1222	11	0	5	3	1	2	copy fasta	CCDC89	chr11	85678848	85691195
CCDC89_chr11_85678848_85691195	0/0	t0007	1224	5	0	2	0	0	3	copy fasta	CCDC89	chr11	85678848	85691195
CCDC89_chr11_85678848_85691195	0/0	t0008	1224	2	0	0	2	0	0	copy fasta	CCDC89	chr11	85678848	85691195
CCDC89_chr11_85678848_85691195	0/0	t0009	1224	1	0	0	1	0	0	copy fasta	CCDC89	chr11	85678848	85691195
CCDC89_chr11_85678848_85691195	0/0	t0010	1224	1	1	0	0	0	0	copy fasta	CCDC89	chr11	85678848	85691195
CCDC89_chr11_85678848_85691195	0/0	t0011	1224	1	0	0	0	0	1	copy fasta	CCDC89	chr11	85678848	85691195
CCDC89_chr11_85678848_85691195	0/0	t0012	1224	1	1	0	0	0	0	copy fasta	CCDC89	chr11	85678848	85691195
CCDC8_chr19_46405329_46418564	0/0	t0001	1623	149	12	24	98	5	10	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	1/0	t0002	1620	114	15	12	62	4	20	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	t0003	1623	63	23	14	19	4	3	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/1	t0004	1623	38	5	21	0	3	8	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	t0005	1624	36	13	5	13	2	3	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	t0006	1623	8	5	3	0	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	t0007	1619	7	0	0	4	0	3	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	t0008	1622	6	6	0	0	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	t0009	1624	5	4	1	0	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	t0010	1623	5	5	0	0	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	t0011	1622	3	0	0	3	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	t0012	1620	2	0	0	2	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	t0013	1620	2	0	0	2	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	t0014	1623	2	2	0	0	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	t0015	1622	2	1	0	1	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	t0016	1624	2	0	0	0	0	2	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	t0017	1623	1	0	1	0	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	t0018	1624	1	1	0	0	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	t0019	1620	1	0	0	1	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	t0020	1624	1	1	0	0	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	t0021	1624	1	0	0	1	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	t0022	1623	1	0	1	0	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	t0023	1623	1	1	0	0	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	t0024	1620	1	0	0	0	0	1	copy fasta	CCDC8	chr19	46405329	46418564