JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC8_chr19_46405329_46418564	0/0	t0025	1623	1	1	0	0	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	t0026	1623	1	1	0	0	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	t0027	1623	1	1	0	0	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	t0028	1624	1	1	0	0	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC90B_chr11_83254081_83291367	1/0	t0001	3226	151	25	35	75	6	9	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/1	t0002	3226	75	19	11	36	2	6	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	t0003	3226	50	5	4	34	1	6	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	t0004	3226	44	4	13	17	3	7	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	t0005	3226	24	6	2	13	0	3	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	t0006	3226	22	2	2	12	0	6	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	t0007	3226	10	8	1	0	1	0	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	t0008	3226	9	9	0	0	0	0	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	t0009	3226	9	9	0	0	0	0	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	t0010	3225	3	3	0	0	0	0	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	t0011	3226	2	0	0	2	0	0	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	t0012	3226	2	0	1	0	1	0	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	t0013	3226	1	0	0	0	0	1	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	t0014	3226	1	0	0	0	0	1	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	t0015	3226	1	1	0	0	0	0	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	t0016	3226	1	0	0	1	0	0	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	t0017	3226	1	0	1	0	0	0	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	t0018	3226	1	1	0	0	0	0	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	t0019	3226	1	0	0	1	0	0	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	t0020	3226	1	1	0	0	0	0	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	t0021	3226	1	0	0	1	0	0	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	t0022	3226	1	0	0	0	0	1	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	t0023	3226	1	0	0	1	0	0	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	t0024	3226	1	0	0	1	0	0	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	t0025	3226	1	1	0	0	0	0	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC91_chr12_28185456_28555166	1/1	t0001	1194	210	41	43	91	10	23	copy fasta	CCDC91	chr12	28185456	28555166
CCDC91_chr12_28185456_28555166	0/0	t0002	1194	25	20	5	0	0	0	copy fasta	CCDC91	chr12	28185456	28555166
CCDC91_chr12_28185456_28555166	0/0	t0003	1194	4	0	2	0	1	1	copy fasta	CCDC91	chr12	28185456	28555166
CCDC91_chr12_28185456_28555166	0/0	t0004	1194	1	0	0	1	0	0	copy fasta	CCDC91	chr12	28185456	28555166
CCDC91_chr12_28185456_28555166	0/0	t0005	1194	1	0	0	0	1	0	copy fasta	CCDC91	chr12	28185456	28555166
CCDC91_chr12_28185456_28555166	0/0	t0006	1194	1	1	0	0	0	0	copy fasta	CCDC91	chr12	28185456	28555166
CCDC92B_chr17_2715801_2754652	0/0	t0001	3876	141	2	39	75	7	18	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/1	t0002	3876	39	4	8	16	3	7	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0003	3873	39	3	0	32	3	1	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0004	3876	32	1	6	10	3	12	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0005	3886	15	0	7	8	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0006	3886	11	9	1	1	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0007	3874	9	0	0	7	0	2	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0008	3876	8	8	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0009	3886	7	1	5	1	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0010	3876	7	5	1	1	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0011	3877	7	0	4	1	0	2	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0012	3877	6	0	5	1	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0013	3877	6	0	0	3	0	3	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0014	3886	5	5	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0015	3883	5	1	1	3	0	0	copy fasta	CCDC92B	chr17	2715801	2754652