JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC92B_chr17_2715801_2754652	0/0	t0016	3876	4	3	0	0	1	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0017	3873	4	0	0	4	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0018	3883	3	0	0	3	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0019	3873	3	3	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	1/0	t0020	3876	3	2	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0021	3886	2	2	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0022	3887	2	1	1	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0023	3886	2	0	1	0	0	1	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0024	3876	2	2	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0025	3876	2	0	0	2	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0026	3873	2	2	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0027	3876	2	0	0	2	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0028	3877	2	0	0	2	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0029	3887	1	1	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0030	3886	1	1	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0031	3884	1	1	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0032	3886	1	1	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0033	3886	1	1	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0034	3883	1	1	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0035	3886	1	1	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0036	3887	1	0	0	1	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0037	3886	1	0	1	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0038	3887	1	1	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0039	3887	1	0	1	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0040	3886	1	0	0	0	0	1	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0041	3886	1	1	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0042	3886	1	1	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0043	3883	1	0	0	1	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0044	3887	1	0	1	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0045	3877	1	0	1	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0046	3876	1	1	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0047	3877	1	1	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0048	3876	1	1	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0049	3876	1	1	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0050	3876	1	1	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0051	3876	1	1	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0052	3876	1	0	0	1	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0053	3876	1	1	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0054	3876	1	0	0	1	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0055	3877	1	0	0	1	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0056	3876	1	0	0	1	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0057	3876	1	1	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0058	3876	1	0	0	0	0	1	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0059	3876	1	0	1	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0060	3876	1	0	0	1	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0061	3877	1	1	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0062	3876	1	1	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0063	3876	1	1	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0064	3876	1	1	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0065	3876	1	1	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652