JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC92B_chr17_2715801_2754652	0/0	t0066	3876	1	0	0	0	1	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0067	3876	1	1	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0068	3876	1	1	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0069	3873	1	0	0	1	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0070	3877	1	0	0	1	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0071	3874	1	0	0	1	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0072	3864	1	0	0	1	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0073	3873	1	0	0	1	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0074	3876	1	0	0	1	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0075	3876	1	1	0	0	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	t0076	3876	1	0	0	1	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92_chr12_123930626_123977831	0/0	t0001	1795	87	32	20	25	5	5	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	1/0	t0002	1795	79	16	25	21	3	13	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/1	t0003	1795	24	0	5	6	2	10	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	t0004	1781	21	19	2	0	0	0	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	t0005	1795	10	10	0	0	0	0	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	t0006	1795	6	6	0	0	0	0	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	t0007	1781	3	3	0	0	0	0	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	t0008	1795	3	0	3	0	0	0	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	t0009	1795	2	0	2	0	0	0	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	t0010	1781	2	2	0	0	0	0	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	t0011	1795	2	0	0	2	0	0	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	t0012	1795	2	0	0	1	0	1	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	t0013	1795	1	1	0	0	0	0	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	t0014	1795	1	0	0	0	0	1	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	t0015	1795	1	0	0	1	0	0	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	t0016	1795	1	0	0	0	0	1	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	t0017	1795	1	1	0	0	0	0	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	t0018	1795	1	1	0	0	0	0	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	t0019	1795	1	1	0	0	0	0	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	t0020	1795	1	0	0	0	0	1	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	t0021	1795	1	0	1	0	0	0	copy fasta	CCDC92	chr12	123930626	123977831
CCDC93_chr2_117910481_118019070	1/0	t0001	4938	100	16	18	53	1	11	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0002	4944	61	3	13	35	1	9	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0003	4936	47	12	9	17	3	6	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0004	4940	20	1	9	7	0	3	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0005	4936	12	11	0	0	1	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/1	t0006	4936	12	5	5	0	0	1	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0007	4941	9	9	0	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0008	4934	7	7	0	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0009	4940	4	0	0	0	0	4	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0010	4937	4	0	3	0	1	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0011	4936	3	0	0	0	0	3	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0012	4940	2	1	1	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0013	4938	2	0	0	2	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0014	4936	2	0	0	0	0	2	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0015	4937	2	2	0	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0016	4941	2	2	0	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0017	4936	2	0	2	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0018	4936	2	2	0	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070