JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC93_chr2_117910481_118019070	0/0	t0019	4944	1	0	0	0	1	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0020	4944	1	0	0	1	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0021	4944	1	1	0	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0022	4936	1	1	0	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0023	4941	1	0	1	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0024	4946	1	1	0	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0025	4940	1	1	0	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0026	4938	1	1	0	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0027	4938	1	0	0	1	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0028	4938	1	0	0	1	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0029	4938	1	0	0	1	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0030	4938	1	1	0	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0031	4938	1	0	0	1	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0032	4934	1	0	1	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0033	4936	1	0	1	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0034	4936	1	1	0	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0035	4937	1	1	0	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0036	4936	1	0	0	1	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0037	4936	1	0	1	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0038	4936	1	1	0	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0039	4936	1	0	0	0	1	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0040	4936	1	1	0	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0041	4938	1	0	0	0	0	1	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0042	4937	1	1	0	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0043	4941	1	1	0	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0044	4936	1	1	0	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0045	4937	1	0	0	0	1	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0046	4938	1	0	0	1	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	t0047	4944	1	0	0	1	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC96_chr4_7035849_7048001	1/1	t0001	486	428	95	82	188	16	45	copy fasta	CCDC96	chr4	7035849	7048001
CCDC96_chr4_7035849_7048001	0/0	t0002	823	3	3	0	0	0	0	copy fasta	CCDC96	chr4	7035849	7048001
CCDC96_chr4_7035849_7048001	0/0	t0003	486	1	0	0	0	0	1	copy fasta	CCDC96	chr4	7035849	7048001
CCDC97_chr19_41305172_41329873	1/1	t0001	2298	212	52	55	65	6	32	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	t0002	2298	55	10	9	30	3	3	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	t0003	2298	49	19	4	21	0	5	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	t0004	2294	6	5	1	0	0	0	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	t0005	2298	6	0	0	6	0	0	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	t0006	2298	2	2	0	0	0	0	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	t0007	2298	2	0	0	2	0	0	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	t0008	2298	2	2	0	0	0	0	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	t0009	2298	1	0	0	0	0	1	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	t0010	2298	1	0	0	0	0	1	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	t0011	2298	1	0	0	1	0	0	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	t0012	2298	1	0	0	0	0	1	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	t0013	2298	1	0	0	0	1	0	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	t0014	2308	1	0	1	0	0	0	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	t0015	2298	1	0	0	0	0	1	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	t0016	2298	1	0	0	0	1	0	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	t0017	2298	1	0	0	1	0	0	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	t0018	2298	1	1	0	0	0	0	copy fasta	CCDC97	chr19	41305172	41329873