JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC97_chr19_41305172_41329873	0/0	t0019	2298	1	1	0	0	0	0	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	t0020	2298	1	1	0	0	0	0	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	t0021	2298	1	0	0	1	0	0	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	t0022	2298	1	0	0	0	1	0	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	t0023	2298	1	0	0	1	0	0	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	t0024	2298	1	0	0	1	0	0	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	t0025	2287	1	0	0	1	0	0	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	t0026	2298	1	1	0	0	0	0	copy fasta	CCDC97	chr19	41305172	41329873
CCDC9B_chr15_40326452_40345939	0/0	t0001	3831	89	0	15	66	1	7	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/1	t0002	3827	49	10	10	18	5	5	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0003	3824	39	7	14	6	3	9	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0004	3831	26	3	3	11	0	9	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0005	3832	24	9	6	6	2	1	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0006	3831	19	10	0	8	1	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0007	3830	14	0	1	12	0	1	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	1/0	t0008	3827	13	1	4	0	3	4	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0009	3832	13	0	1	12	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0010	3832	13	0	0	13	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0011	3842	12	12	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0012	3832	10	1	6	0	2	1	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0013	3832	9	0	0	7	0	2	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0014	3841	8	8	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0015	3833	5	0	1	4	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0016	3829	4	3	1	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0017	3831	4	4	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0018	3827	3	0	0	3	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0019	3831	3	0	1	0	0	2	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0020	3831	2	0	0	2	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0021	3831	2	0	0	2	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0022	3832	2	0	0	2	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0023	3827	2	0	2	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0024	3855	2	2	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0025	3865	2	1	0	1	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0026	3827	2	2	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0027	3830	2	2	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0028	3843	2	2	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0029	3830	2	0	0	2	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0030	3831	1	0	1	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0031	3827	1	0	0	1	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0032	3824	1	0	0	0	0	1	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0033	3831	1	0	0	1	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0034	3831	1	0	0	1	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0035	3832	1	0	0	1	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0036	3827	1	0	0	1	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0037	3831	1	0	1	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0038	3831	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0039	3866	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0040	3827	1	0	0	1	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0041	3857	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0042	3858	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939