JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC9B_chr15_40326452_40345939	0/0	t0043	3860	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0044	3861	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0045	3862	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0046	3864	1	0	0	1	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0047	3866	1	0	0	1	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0048	3827	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0049	3827	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0050	3831	1	0	1	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0051	3829	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0052	3831	1	0	0	1	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0053	3831	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0054	3829	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0055	3832	1	0	1	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0056	3830	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0057	3833	1	0	0	1	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0058	3833	1	0	0	0	0	1	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0059	3843	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0060	3844	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0061	3858	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0062	3844	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0063	3817	1	0	1	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0064	3855	1	0	0	0	0	1	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0065	3864	1	0	0	0	0	1	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0066	3831	1	0	0	0	0	1	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0067	3832	1	0	0	1	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0068	3824	1	0	0	0	0	1	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0069	3827	1	0	0	0	0	1	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0070	3829	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0071	3817	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0072	3831	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0073	3824	1	0	0	0	1	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	t0074	3831	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9_chr19_47251525_47276953	0/0	t0001	414	43	2	4	29	1	7	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/1	t0002	416	38	3	13	13	5	3	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0003	412	27	8	2	17	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0004	418	24	2	7	11	0	4	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0005	420	17	3	7	3	1	3	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0006	416	12	2	4	5	0	1	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0007	418	8	6	0	0	0	2	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0008	418	8	1	3	2	0	2	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0009	420	7	0	2	3	0	2	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0010	420	6	4	0	0	0	2	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0011	432	6	4	0	2	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0012	414	5	1	1	1	0	2	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0013	432	5	0	0	5	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0014	420	5	0	4	0	1	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0015	408	4	0	1	3	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0016	410	4	0	1	3	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0017	414	4	2	1	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0018	432	4	0	0	3	0	1	copy fasta	CCDC9	chr19	47251525	47276953