JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC9_chr19_47251525_47276953	0/0	t0019	430	4	0	2	1	1	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0020	432	4	0	1	3	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0021	436	4	0	2	1	0	1	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0022	450	4	0	1	3	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0023	416	3	2	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0024	420	3	2	1	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0025	412	3	3	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0026	422	3	2	0	0	0	1	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0027	414	3	3	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0028	424	3	3	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0029	422	3	0	1	2	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0030	422	3	0	1	2	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0031	436	3	0	0	3	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0032	418	2	2	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0033	414	2	2	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0034	422	2	1	0	0	0	1	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0035	416	2	2	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0036	418	2	0	0	1	0	1	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0037	416	2	2	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0038	434	2	0	1	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0039	428	2	1	1	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0040	424	2	1	1	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0041	438	2	0	0	0	1	1	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0042	436	2	0	0	1	0	1	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0043	438	2	0	0	0	0	2	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0044	446	2	1	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0045	444	2	0	0	2	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0046	450	2	0	0	2	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0047	444	2	0	0	0	0	2	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0048	434	2	0	1	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0049	446	2	0	0	2	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0050	412	2	2	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0051	432	2	0	0	0	0	2	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	1/0	t0052	432	2	0	0	0	1	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0053	428	2	0	2	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0054	416	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0055	416	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0056	416	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0057	420	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0058	422	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0059	408	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0060	402	1	0	0	0	0	1	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0061	414	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0062	408	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0063	412	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0064	416	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0065	414	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0066	412	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0067	410	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0068	420	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953